Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5671 111 2e-19 seq4524 111 2e-19 seq3161 111 2e-19 seq3160 111 2e-19 seq5482 84.2 2e-11 >seq5671 Length=8019 Score = 111 bits (122), Expect = 2e-19 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 7601 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 7660 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50619 |||||||| || ||||| |||| | | || | || | | ||| | || Sbjct 7661 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 7720 Query 50620 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50679 || || || ||| || || ||||||| ||||| || ||||| | || ||| Sbjct 7721 GAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 7780 Query 50680 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50738 | || | ||||||||||| ||| ||||| ||| ||||||| ||||| || || ||| | Sbjct 7781 CGACTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 7839 Query 50739 ATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTT 50796 || |||| | |||||| | ||| |||| || | ||| | || || || Sbjct 7840 GCTGCTTGTATC-GCTGGGGCTGGAGAAGCACTACAACGTGACG-CAGCCGTTCGACTTC 7897 Query 50797 ATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATA 50855 ||| | | || ||| || ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 7898 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGAGTA 7956 >seq4524 Length=6481 Score = 111 bits (122), Expect = 2e-19 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 5947 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 5888 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50619 |||||||| || ||||| |||| | | || | || | | ||| | || Sbjct 5887 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 5828 Query 50620 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50679 || || || ||| || || ||||||| ||||| || ||||| | || ||| Sbjct 5827 GAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 5768 Query 50680 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50738 | || | ||||||||||| ||| ||||| ||| ||||||| ||||| || || ||| | Sbjct 5767 CGACTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 5709 Query 50739 ATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTT 50796 || |||| | |||||| | ||| |||| || | ||| | || || || Sbjct 5708 GCTGCTTGTATC-GCTGGGGCTGGAGAAGCACTACAACGTGACG-CAGCCGTTCGACTTC 5651 Query 50797 ATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATA 50855 ||| | | || ||| || ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 5650 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGAGTA 5592 >seq3161 Length=4752 Score = 111 bits (122), Expect = 2e-19 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Plus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 535 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 594 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50619 |||||||| || ||||| |||| | | || | || | | ||| | || Sbjct 595 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 654 Query 50620 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50679 || || || ||| || || ||||||| ||||| || ||||| | || ||| Sbjct 655 GAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 714 Query 50680 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50738 | || | ||||||||||| ||| ||||| ||| ||||||| ||||| || || ||| | Sbjct 715 CGACTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 773 Query 50739 ATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTT 50796 || |||| | |||||| | ||| |||| || | ||| | || || || Sbjct 774 GCTGCTTGTATC-GCTGGGGCTGGAGAAGCACTACAACGTGACG-CAGCCGTTCGACTTC 831 Query 50797 ATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATA 50855 ||| | | || ||| || ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 832 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGAGTA 890 >seq3160 Length=11589 Score = 111 bits (122), Expect = 2e-19 Identities = 247/360 (69%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 50500 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50559 ||||| || || ||||| ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 419 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 360 Query 50560 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50619 |||||||| || ||||| |||| | | || | || | | ||| | || Sbjct 359 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 300 Query 50620 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50679 || || || ||| || || ||||||| ||||| || ||||| | || ||| Sbjct 299 GAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTG 240 Query 50680 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50738 | || | ||||||||||| ||| ||||| ||| ||||||| ||||| || || ||| | Sbjct 239 CGACTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 181 Query 50739 ATTG-TTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTT 50796 || |||| | |||||| | ||| |||| || | ||| | || || || Sbjct 180 GCTGCTTGTATC-GCTGGGGCTGGAGAAGCACTACAACGTGACG-CAGCCGTTCGACTTC 123 Query 50797 ATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATA 50855 ||| | | || ||| || ||||||| || ||||| ||||| |||| | || ||||| || Sbjct 122 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAG-GTGGGCGAGTA 64 >seq5482 Length=23815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 219/331 (66%), Gaps = 5/331 (2%) Strand=Plus/Minus Query 157481 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTT---GCCACCT 157537 |||||| |||||||| |||| |||||| || ||| || || ||||| ||| || Sbjct 21911 ATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 21852 Query 157538 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 157597 || ||||||| || | | || || || || || ||||| || | ||| || | | Sbjct 21851 TGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCCCATTCGAC 21792 Query 157598 GTGCCGTTCGTAGATTTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCA 157657 ||||||||||| || | |||| | | ||| | | ||| ||||| || ||| Sbjct 21791 GTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCA 21732 Query 157658 ATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGA 157717 || |||||| | || ||| | ||||| || || | || | || |||||| Sbjct 21731 ATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTAAATGCCGTCG 21672 Query 157718 ATGCTATCG-CTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGAGTCAGACTGCC 157776 ||||| ||| | ||| | || | | || || || ||||||||||| || | |||| Sbjct 21671 ATGCTGTCGTCCTTCGA-GGCGACCAAGAAGCACGAGCTCATCTGCGGCTTCGGCGTGCC 21613 Query 157777 GGCAGCGAACATGGTTGGGCTTGCGTGCGTG 157807 ||| ||| | ||| ||| | ||||||||| Sbjct 21612 GGCGTTGAAGAGGGTCGGGGTGGCGTGCGTG 21582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506976190127280