Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5482 187 6e-42 >seq5482 Length=23815 Score = 187 bits (206), Expect = 6e-42 Identities = 521/781 (67%), Gaps = 34/781 (4%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 |||||||||||||| || || | | ||| || || || | || || |||||| || Sbjct 21580 TTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCG 21639 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | ||||||||| |||||| || || | || || || ||| | Sbjct 21640 TGCTTCTTGGTCGCCTCGAAGGACGACAGCATCGACGGCATTTACGATACGCTGAAGGAG 21699 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCG-T 363723 || || | || |||| || ||||| ||||| || | || | ||||| | || | Sbjct 21700 TGCGCAGTCATCAGCAAGGCGGCCGGCGGCATTGGCCTGCA-CG-TGCACAACATCCGCT 21757 Query 363724 GCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | | | ||| ||||| |||||| || |||||||||||||| || ||||| Sbjct 21758 CCGCCGG-CAGCTACATCGCCGGCACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTA 21816 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || || || |||| ||||| | ||||| |||||||| || || |||||||| || || Sbjct 21817 CGCGTCTTCAACAACACTGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCC 21876 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 || || |||| || ||||| || ||||| || || | | |||||| || | ||| Sbjct 21877 TTCGCCGTGTACCTTGAGCCGTGGCACGCCGACATCTTCG-GCTTCTTG--CTGCTGAAG 21933 Query 363904 ---AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 ||||| || || || || ||| || ||||| || || || || || ||| | | Sbjct 21934 CGCAACACTGGCAAGGACGACCAGCGCGCCCGTGACCTCTTTTACGCGCTGTGGATCCCA 21993 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTG---CCCA- 364014 |||| || |||||||| ||| || || | | || ||| || || || || | Sbjct 21994 GACCTGTTCATGAAGCGTGTGAAG--AGCGAGGGCAAGTGG--ACGCTGATGGATCCGAG 22049 Query 364015 CACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAG 364074 ||| ||| || || || ||| | || || || | || || ||||| Sbjct 22050 CAC--ATGCCCGGGGCTGAGCGACTGCTACGGCGAGGAGTTTGAACGCCTGTACGAGCGC 22107 Query 364075 TATGAATCGGAGGGAAAGGCTCGTA----AGACAATTCCCGCACAGAAGCTATGGTTTGC 364130 || || || |||| | | || |||| || | || ||| || | ||||| || Sbjct 22108 TACGA----GAAGGAAGGCCGCGGCGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTCGC 22163 Query 364131 CATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAA 364190 ||| | || |||||||| ||||| || || | || | ||||| ||| ||||||| Sbjct 22164 GATCCTTGAGTCGCAGATCGAGACGGGCGTGCCTTTCATCCTCTACAAGGATGCGTGCAA 22223 Query 364191 CCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGA 364249 | ||||||| |||||| || ||||||| || || || | | ||||| || ||||||| Sbjct 22224 CAGCAAGTCGAACCAGAAGAACCTTGGCACGAT-CAAATGCTCGAACCTGTGCACCGAGA 22282 Query 364250 TTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTC 364309 || | || |||||| | ||||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 22283 TTGTGGAGTACACCTCGCCCGAGGAGACCGCCGTGTGCAACCTCGCCTCGATCGCGCTGC 22342 Query 364310 C 364310 | Sbjct 22343 C 22343 Score = 107 bits (118), Expect = 5e-18 Identities = 283/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 |||||||||||| | ||||| |||||||| || || || | ||||||||||| || Sbjct 22777 CGCAACTCCCTCTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAAT 22836 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 |||||||||||||| || || || || | || |||||| || | || || Sbjct 22837 AACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGTGGCGAG 22896 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCT-TTCCGACCGCGGGCTGTGGGGTGA 364910 || ||||| || || |||||||| || | ||| || ||||| ||||| |||||| || Sbjct 22897 TTCCCGGTGGTGAACAAGTACCTCGTGATGGACCTCATCCGA-CGCGGCCTGTGGAACGA 22955 Query 364911 CAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCC 364970 | ||| ||| | |||||| | || || || | | || ||| || | || Sbjct 22956 GACGATGCGCAACGAGATCATCTCATTCAACGGCTCCATCCTGACAATTGACGGCATCCC 23015 Query 364971 AGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGA 365030 || || || ||| | ||| ||||| ||||| ||| | ||| | || || || Sbjct 23016 CGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGCAAGCTGATCGA 23075 Query 365031 TATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGAC 365090 ||||| ||| ||||| | ||| ||| |||||||| ||| | ||| || | Sbjct 23076 CATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCGCAGTCGTTGAACCTGTTCCTG-C 23134 Query 365091 TCAG-CCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 || || ||||| | | || | || || |||| |||||| |||| | | ||| || | Sbjct 23135 AGAGCCCGACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTGCGGCCTCA 23194 Query 365150 AGACAGG 365156 |||| || Sbjct 23195 AGACGGG 23201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303252920414678