Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq6023 91.5 2e-13 seq4237 91.5 2e-13 >seq6023 Length=7033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 229/347 (66%), Gaps = 16/347 (5%) Strand=Plus/Minus Query 126046 CCAATGCCGACCGACCCGTTGACCAGCACCAGCGGAATGATGGGCACAAAGTGGACCGGC 126105 |||||||| |||| |||||| ||||| || ||| | |||||||| |||| |||| Sbjct 5311 CCAATGCCCACCGCACCGTTGCACAGCAGCATCGGCACAATGGGCACGTAGTGATTCGGC 5252 Query 126106 TCACCCTCCGAGCTCTGCTC------------CAAGATGGGGTCGTCCTCCTCGCGGAAA 126153 || || || || | ||| || | |||||||||||||| | || Sbjct 5251 TCCACCGGCGTGCCTTCCTCATCCATATAGTCCAGCAACGGGTCGTCCTCCTCAGGAAAG 5192 Query 126154 ATGTA--GGGTAGAATCTTGTGCGGTTTGGTGTAAATGTAGCGGGGAGCTGCCGAATCCT 126211 ||| |||| ||| | || | || | | | |||||||||||||| || || | Sbjct 5191 ATGAGCCGGGT-GAAGCGACTGAGCTTCG-TAAAGATGTAGCGGGGAGCGGCGTGGTCGT 5134 Query 126212 TGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGG 126271 |||| || | ||||| ||| ||||| || |||||| | | || | | |||||| Sbjct 5133 TGCCGAGCTGCTGCCGCGAGCCGAACTGGCCCTCCGGCACGAGCAGGTTGATGTTGTTGC 5074 Query 126272 CTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCT 126331 | ||| |||| |||||| | ||| ||||| ||||| ||| | ||||||||| | Sbjct 5073 CGCCCGTGAAGTTCTGCGCCATCTTCACAATCGTCTCCTGCAGCGACGTCTCGCCGTGGT 5014 Query 126332 TGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTG 126378 | || | | | ||||| | ||||||| ||||| || |||||| Sbjct 5013 GGAAGGCCGACACCTCGGAGATGTAGCCGGAGAGCTGGGCCACCTTG 4967 >seq4237 Length=17837 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 |||||||| |||| || || ||||| ||||| ||||| ||||| | |||||| Sbjct 8959 TCCTTGCCGCCCTGCAGACGTGTGCCGAACTGGCCGTCTTTGCGCAACAGAGGAACATTG 8900 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| | || || ||||||||||| | || || |||| |||| || ||| ||||| Sbjct 8899 TTGCCGCCGACGAAGTCCTGCGCCATGCCCACGATCGTCT-GCACGAGCGACTGGTCGCC 8841 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| || || || ||||||||| |||||| | |||||||| Sbjct 8840 GTGGTGGTAGGCGGAGTGTTCCGCGACGTAGCCGGCTAGCTGCACCACCTTGAT 8787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611345923970400