Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5482 118 9e-22 >seq5482 Length=23815 Score = 118 bits (130), Expect = 9e-22 Identities = 423/649 (65%), Gaps = 27/649 (4%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||| ||||| |||| ||||| || ||| || ||||| | | ||| || | Sbjct 22294 TGTACTCCACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGT 22235 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 | || ||||||| ||||| ||||| | ||| | ||| |||||| |||| |||| Sbjct 22234 TCGACTTGCTGTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCG 22175 Query 129857 TTTCGACAATGGTCCTGAACAAGTC-TC--GAGCCTTGATCTGTCTT-ACAAATTTGCCA 129912 || || | || |||| | | || | |||| |||| |||| || ||| Sbjct 22174 ACTC---AAGGATCGCGAACCACACCTCCTGCGCCTGGATC-GTCTGCACGCCGCGGCCT 22119 Query 129913 CATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCG---AGC 129969 |||||||| | | ||||| ||||||| || ||||| | |||| ||| Sbjct 22118 TCCTTCTCGTAGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTA---GCAGTCGCTCAGC 22062 Query 129970 AACGGCGATTCACGCGGACACATCAAACTCCACATTCCATC-CGCTTCGACTCGTTTCAT 130028 ||| || | |||| ||||| ||||| | || || | |||| || || ||||| Sbjct 22061 CCCGGGCATGTGCTCGGATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCAT 22003 Query 130029 AAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCG----CGCTTTTCTATCCTCGG 130084 |||| || || | |||||| ||||| || | || || |||| || |||| | Sbjct 22002 GAACAGGTCTGGGATCCACAGCGCGTAAAAGAGGTCACGGGCGCGCTGGTCG-TCCTTGC 21944 Query 130085 CACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACAT 130144 || |||| || ||||| | ||| || | ||||||||||||||||| |||| | Sbjct 21943 CAG---TGTTGCGCTTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGT 21887 Query 130145 AAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGT 130201 | | || | |||||||| || || ||| || ||||| |||| ||| | | |||| Sbjct 21886 ACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGT 21827 Query 130202 TGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAAC 130261 || |||| || | ||| | | ||| || || | ||||||||| |||| | ||| | | Sbjct 21826 TGAAGACGCGTAGCATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGC 21767 Query 130262 TGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCA 130321 |||| | || | ||| || ||| || || ||||||||| | || || | Sbjct 21766 TGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGA 21707 Query 130322 ACGCGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTT 130370 ||||| || ||||| || |||||||| |||| ||||| || || Sbjct 21706 CTGCGCACTCCTTCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTT 21658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419697159042385