Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5671 150 4e-31 seq4524 150 4e-31 seq3161 150 4e-31 seq3160 150 4e-31 seq4237 105 1e-17 >seq5671 Length=8019 Score = 150 bits (166), Expect = 4e-31 Identities = 498/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 7938 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 7879 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 7878 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 7819 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 7818 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 7759 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 7758 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 7699 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 7698 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 7640 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 7639 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 7582 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 7581 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 7522 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | | || | ||||| |||||||||| Sbjct 7521 AGCCGCTCCTGGAAGCTCGCTCCGCTGCCA-ATCCACCGCACCGCCCACTCTGCCTTCTT 7463 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 7462 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 7407 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 7406 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 7347 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 7346 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 7287 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 7286 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 7227 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 7226 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 7193 >seq4524 Length=6481 Score = 150 bits (166), Expect = 4e-31 Identities = 498/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 5610 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 5669 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 5670 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 5729 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 5730 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 5789 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 5790 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 5849 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 5850 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 5908 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 5909 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 5966 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 5967 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 6026 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | | || | ||||| |||||||||| Sbjct 6027 AGCCGCTCCTGGAAGCTCGCTCCGCTGCCA-ATCCACCGCACCGCCCACTCTGCCTTCTT 6085 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 6086 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 6141 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 6142 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 6201 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 6202 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 6261 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 6262 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 6321 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 6322 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 6355 >seq3161 Length=4752 Score = 150 bits (166), Expect = 4e-31 Identities = 498/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 872 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 813 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 812 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 753 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 752 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 693 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 692 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 633 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 632 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 574 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 573 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 516 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 515 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 456 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | | || | ||||| |||||||||| Sbjct 455 AGCCGCTCCTGGAAGCTCGCTCCGCTGCCA-ATCCACCGCACCGCCCACTCTGCCTTCTT 397 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 396 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 341 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 340 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 281 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 280 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 221 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 220 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 161 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 160 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 127 >seq3160 Length=11589 Score = 150 bits (166), Expect = 4e-31 Identities = 498/757 (66%), Gaps = 22/757 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | ||||||||||||||| || | || Sbjct 82 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTC 141 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | ||| | | ||||| ||||| ||||| | Sbjct 142 ACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATG 201 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 202 TACTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCGCGTCGCAGATG 261 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || || | | || || ||| | | | | |||| Sbjct 262 AACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 321 Query 251803 TTGTTCTCCA---GCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | || | |||||| | || || |||| | |||||| |||||||| Sbjct 322 TTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-CAAAGTCCGTGTGCAGGCCCTCGTC 380 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| ||| | ||||||| | || | ||| |||||||||| ||| || ||| | ||| Sbjct 381 GCGCGAGATCAGCTCGTTG--CTGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGC 438 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 ||||| | ||||| || || || ||||| | | ||||| || | | | | | Sbjct 439 CAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATC 498 Query 251977 AGGCGCT-CAGCAAACGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTT 252035 || |||| | | || | | |||| | | || | ||||| |||||||||| Sbjct 499 AGCCGCTCCTGGAAGCTCGCTCCGCTGCCA-ATCCACCGCACCGCCCACTCTGCCTTCTT 557 Query 252036 -TCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGGCATCGT 252091 | | | | ||||| || | ||| || | || || || ||| |||| || Sbjct 558 CTGGATGCAC-GGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCG---CTGT 613 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 || |||| || || ||||| | |||||| |||| || |||||| || | | || Sbjct 614 CCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCA 673 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 |||| | | || || ||||| || | | || || | ||| | | Sbjct 674 GCTGGAACCCGTAAAACGCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCG 733 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 ||| |||||| ||||| ||||| ||||||||||| |||||| |||| | | |||||||| Sbjct 734 CAAGGTTCTCGATCACGATGCCGTCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGA 793 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTC 252308 |||| ||||| ||||||| |||| |||| |||||| Sbjct 794 AGTGCCGCTCCCCGTCGTTCAGCT--TCAC-CCAGTC 827 >seq4237 Length=17837 Score = 105 bits (116), Expect = 1e-17 Identities = 217/318 (68%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTAT----GATGTGGAGCGTTCTAT 218573 |||||| | ||||||||||| ||||||||||| ||| ||| ||||| || Sbjct 8652 GACTTCGTGGACAAGGAGCTGATTCTTTTCTC----TATTGCGGATTGCGAGCGCAGCAT 8707 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||||||| | || ||||||||||| ||||| ||||||||||||||| ||||| Sbjct 8708 CCCCAGCGCAATTGACGGCCTCAAGCCCGGCCAGCGCAAGATCCTCTTTGCCTGCTTCAA 8767 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||||| || | | || ||||| | ||| | | || || || | ||| || Sbjct 8768 GCGCAACCTCGTCAACGCCATCAAGGTGGTGCAGCTAGCCGGCTACGTCGCGGAACACTC 8827 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||| || ||| | ||||| | || || |||||||| ||||| Sbjct 8828 CGCCTACCACCACGGCGACCAGTCGCTCGTGCAG---ACGATCGTGGGCATGGCGCAGGA 8884 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || || ||| | |||| ||| | | ||| | | || |||| ||||| || | || Sbjct 8885 CTTCGTCGGCGGCAACA--ATGTTCCT-CTGTTGCGCAAAGACGGCCAGTTCGGCACACG 8941 Query 218808 TCTATTGGGTGGAAAGGA 218825 ||| ||| || ||||| Sbjct 8942 TCTGCAGGGCGGCAAGGA 8959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027757403140389