Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5671 89.7 1e-12 seq4524 89.7 1e-12 seq3161 89.7 1e-12 seq3160 89.7 1e-12 >seq5671 Length=8019 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 7565 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 7622 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 7623 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 7681 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 7682 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 7741 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 7742 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 7801 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 7802 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 7861 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 7862 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 7921 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 7922 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 7976 >seq4524 Length=6481 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 5983 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 5926 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 5925 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 5867 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 5866 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 5807 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 5806 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 5747 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 5746 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 5687 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 5686 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 5627 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 5626 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 5572 >seq3161 Length=4752 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Plus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 499 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 556 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 557 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 615 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 616 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 675 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 676 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 735 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 736 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 795 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 796 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 855 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 856 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 910 >seq3160 Length=11589 Score = 89.7 bits (98), Expect = 1e-12 Identities = 274/416 (66%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT--CGGTCTGTCTA 243403 |||||||| | || |||||| ||| || |||||||||| || || || | | Sbjct 455 TTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGC--A 398 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 ||||| | ||| |||||||||||||| ||| | || | ||| || |||| Sbjct 397 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCGTGC-CTGCTGTACAAC 339 Query 243463 AAGC---TCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTT 243519 | || || || ||||||| || ||| || | |||||| ||| || || Sbjct 338 ACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTG 279 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| || ||||| |||||||| | || || || || ||||||||| | Sbjct 278 AACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCG 219 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | | |||| || Sbjct 218 GACCTGATGGCGCAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTG 159 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 ||||| |||||| | | | || || | ||| |||||| | || ||||| || || Sbjct 158 GAGAAGCACTACAACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGC 99 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATGA 243754 || || ||||||||||| ||| || | || ||||| | | || || ||||||| Sbjct 98 AAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC-GGCGTGATGA 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102794806311150