Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5482 179 4e-40 seq5671 125 9e-24 seq4524 125 9e-24 seq3161 125 9e-24 seq3160 125 9e-24 >seq5482 Length=23815 Score = 179 bits (198), Expect = 4e-40 Identities = 750/1168 (64%), Gaps = 23/1168 (2%) Strand=Plus/Minus Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 || |||||| || ||||| ||||| || ||| ||| || |||| || |||||||| Sbjct 22707 CTTCCACATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTA 22648 Query 114160 TGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219 |||||||| ||| ||||| || |||||| | || ||| || || ||||| Sbjct 22647 CGGGCCCTCCTCCTTCGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTC 22588 Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 114279 ||||| ||| |||| || ||||| | | || | || || ||| || Sbjct 22587 GAAAATCTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGAT 22528 Query 114280 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 114339 || ||||||| || || || || || | ||| | ||||| | | ||| || Sbjct 22527 GAAGGCATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCG 22468 Query 114340 TCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 114399 || || |||||||| || || | || | ||||| || | || || || |||| Sbjct 22467 GCGCGCCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGAT 22408 Query 114400 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATA 114459 ||| |||| | ||| | || ||| | ||| |||| || || || | Sbjct 22407 CTGCTTCGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAA 22348 Query 114460 CTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTC 114519 ||| || ||||| || || || || ||||| | |||||| || |||||||| Sbjct 22347 GCGAGGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTC 22288 Query 114520 TATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 114579 | ||| || || |||| || || | || || ||||| | |||||| || || ||||| Sbjct 22287 CACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTT 22228 Query 114580 TGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG 114639 |||| |||||||||||||| || ||| | ||| |||||||| | || |||| || Sbjct 22227 GCTGTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAG 22168 Query 114640 AATAGCCTTCCAGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGT 114698 || || ||| || | | ||| |||| | || | | || || |||| ||||| Sbjct 22167 GATCGCGAACCACACCTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCTTCCTTCTCGT 22109 Query 114699 ACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTAT 114758 | ||| ||| ||||||||| || || | || ||||| || || | Sbjct 22108 AGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTG 22050 Query 114759 CT-GGGCAGAAGAGAGACCA-TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGG 114816 || || | || | ||| ||| || | ||| || |||||||||||||| |||||||| Sbjct 22049 CTCGGATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGG 21991 Query 114817 GATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGA 114874 |||||| || || | ||||| || || ||| ||| || || | || ||| | Sbjct 21990 GATCCACAGCGCGTAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCAGTGTTGCGC 21933 Query 114875 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 114934 || | ||| ||| | | ||| || ||||||||||| || |||||||| |||| | Sbjct 21932 TTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCG 21873 Query 114935 CCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGC 114991 ||||| || || || |||||| || || | || ||| || || ||||| ||| Sbjct 21872 CCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGC 21813 Query 114992 ATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTC 115049 || || | | |||| || ||| || || || ||| || | | || | Sbjct 21812 ATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGC 21755 Query 115050 TGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 115109 || | || | ||||| ||||| || || ||| ||| ||| ||||||||| Sbjct 21754 GGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCT 21695 Query 115110 TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC---AGC 115166 | || | |||| || |||||||| ||| |||| |||| | ||||| ||| Sbjct 21694 TCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGC 21635 Query 115167 TCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACA 115226 | ||| || ||| | || || || |||||||||||||| || || ||||| |||| | Sbjct 21634 T---CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGA 21578 Query 115227 TACCTTGGGACATCTTATCGTAGGTCTC 115254 || | |||||| ||||||||||| Sbjct 21577 AGCCCTTCGACATCAAGTCGTAGGTCTC 21550 >seq5671 Length=8019 Score = 125 bits (138), Expect = 9e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 7665 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 7606 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 7605 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 7546 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || ||| Sbjct 7545 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCAAT 7490 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 7489 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 7436 >seq4524 Length=6481 Score = 125 bits (138), Expect = 9e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 5883 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 5942 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 5943 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 6002 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || ||| Sbjct 6003 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCAAT 6058 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 6059 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 6112 >seq3161 Length=4752 Score = 125 bits (138), Expect = 9e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 599 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 540 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 539 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 480 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || ||| Sbjct 479 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCAAT 424 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 423 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 370 >seq3160 Length=11589 Score = 125 bits (138), Expect = 9e-24 Identities = 170/234 (73%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 355 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 414 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||||| |||||| | || || || || |||||||||||||| Sbjct 415 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 474 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTG-TGTCAAA 126225 |||||||| |||||| | | || |||| | | ||| || || | || ||| Sbjct 475 CCCTCCACCGCCGCGAAGCCGATCAGCCGCT---CCTGGAAGCTCG-CTCCGCTGCCAAT 530 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 |||| || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 531 CCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597308581939320