Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5482 199 4e-46 >seq5482 Length=23815 Score = 199 bits (220), Expect = 4e-46 Identities = 495/750 (66%), Gaps = 6/750 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||||||||| |||||||| || || ||| ||| |||||| ||||| ||| || Sbjct 21589 GCCACCCCGACCCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCTTG 21648 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | |||| |||| |||| ||| |||| ||| | || ||||| || || | Sbjct 21649 GTCGCCTCGAAGGACGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTC 21708 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || || || | || ||| || | || || || | Sbjct 21709 ATCAGCAAGGCGGCCGGCGGCATTGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGC 21768 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| || || ||||| || || || || || || ||||| || ||||||||| Sbjct 21769 TACATCGCCGGCACGAACGGCACGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAAC 21828 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || ||||||||||||||||| || || | | | ||||| | ||||| || || Sbjct 21829 AACACTGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTAC 21888 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG---AACCACGGC 94248 || ||||| |||||||| ||| | | ||| | |||| ||| ||| ||| Sbjct 21889 CTTGAGCCGTGGCACGCCGACATCTTCGGCTTCTT---GCTGCTGAAGCGCAACACTGGC 21945 Query 94249 AACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || || || | ||| | |||||||| ||||| || ||| | |||||||| || ||| Sbjct 21946 AAGGACGACCAGCGCGCCCGTGACCTCTTTTACGCGCTGTGGATCCCAGACCTGTTCATG 22005 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || ||| | | |||| || | ||| | ||| || || ||| Sbjct 22006 AAGCGTGTGAAGAGCGAGGGCAAGTGGACGCTGATGGATCCGAGCACATGCCCGGGGCTG 22065 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 |||| | || | |||||| | |||| | || ||||| | | ||| Sbjct 22066 AGCGACTGCTACGGCGAGGAGTTTGAACGCCTGTACGAGCGCTACGAGAAGGAAGGCCGC 22125 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | | || || | || | || ||||| |||| | || ||| | ||| Sbjct 22126 GGCGTGCAGACGATCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCGCAGATCGAG 22185 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 ||||| ||| | |||| | | |||||| | |||| |||||| |||||| || || Sbjct 22186 ACGGGCGTGCCTTTCATCCTCTACAAGGATGCGTGCAACAGCAAGTCGAACCAGAAGAAC 22245 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||||| ||||||| ||||||||||||||||| ||||| || || || || Sbjct 22246 CTTGGCACGATCAAATGCTCGAACCTGTGCACCGAGATTGTGGAGTACACCTCGCCCGAG 22305 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 |||| || ||||| ||||| | ||| ||| Sbjct 22306 GAGACCGCCGTGTGCAACCTCGCCTCGATC 22335 Score = 98.7 bits (108), Expect = 1e-15 Identities = 197/284 (69%), Gaps = 15/284 (5%) Strand=Plus/Plus Query 95098 CTTG-TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTT 95156 |||| |||| || |||||||| || || ||| |||||||||| ||||| ||||||| || Sbjct 22788 CTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTCGGCAATAACGAGTGCTT 22847 Query 95157 CGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCAT 95216 ||| ||||||||||| ||| | ||| | || || | || || ||||| || | Sbjct 22848 CGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGTGGCGAGTTCCCGGTGGT 22907 Query 95217 CAACAAGCACCTCCTACGGGACCTGA--CGTCTCTGGGTGTGTGGGGTGAC-AAGGTCAA 95273 |||||| ||||| | |||||| | || | | | |||| | ||| | | ||| Sbjct 22908 GAACAAGTACCTCGTGATGGACCTCATCCGACGCGGCCTGTGGAACGAGACGATGCGCAA 22967 Query 95274 -GA-ACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--CCCGCAAATACCGGAGG 95329 || | || || | |||||||||| ||| || || | || || || || | Sbjct 22968 CGAGATCATCTCAT-----TCAACGGCTCCATCCTGACAATTGACGGC--ATCCCCGACG 23020 Query 95330 ACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || |||||| ||||||| |||||||||||||| || |||||| Sbjct 23021 ACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGC 23064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494685916422840