Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5482 372 3e-98 seq5671 172 5e-38 seq4524 172 5e-38 seq3161 172 5e-38 seq3160 172 5e-38 >seq5482 Length=23815 Score = 372 bits (412), Expect = 3e-98 Identities = 1168/1778 (66%), Gaps = 61/1778 (3%) Strand=Plus/Minus Query 152709 GCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAA 152768 ||||| | ||| ||||||| || |||| |||||| ||||||||||| ||||| ||| Sbjct 23231 GCCGCCGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAG 23172 Query 152769 TTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGG 152828 | | ||||| || ||| | | ||||| | || |||||| || ||||| || Sbjct 23171 AAGAGCATCGACGTGATCTGGCCCGAGGTCGGGCTCTGCAGGAACAGGTTCAACGACTGC 23112 Query 152829 CTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCA---TGCGTTTTGCCTTC 152885 ||| || ||| | | |||||| ||||| || |||| |||| | || Sbjct 23111 GACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGGA--- 23055 Query 152886 ATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGA 152945 |||||||| |||| ||| | | || | | || || || || ||||| || | Sbjct 23054 ATCTCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAGG 22995 Query 152946 ATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATT-TCGGGCGTGTACACGTTCAGTTT 153004 || ||||| ||| || | || |||| || || || | | ||| | || Sbjct 22994 ATGGAGCCGTTGAATGAGATGATCTCGTTGCGCATCGTCTCGT-TCCACAGGCCGCGTCG 22936 Query 153005 AATGAGGTC-ATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTC 153063 |||||||| ||| | | ||||| ||| ||||| | |||||||| ||| || || | Sbjct 22935 GATGAGGTCCATC-ACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACACGGC 22877 Query 153064 TCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCG 153123 | || | || ||||| || || ||| | ||||||||||| || || || | || Sbjct 22876 GTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACG 22817 Query 153124 TGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATG 153182 | | ||||| ||||| ||||| ||| | || || |||| |||| | || | Sbjct 22816 TCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCT 22757 Query 153183 TCGTCCTTCAACGCCTG--CCAATCCCACAGCGCCGACGGTGTCGCG-------TTCCAC 153233 || ||||||| | ||| ||| ||||| | |||| | | ||| |||||| Sbjct 22756 TC-TCCTTCA--GACTGTCCCAGTCCCAGCG-GCCGCTGTTCGGGCGGGGGTTCTTCCAC 22701 Query 153234 ATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCG 153293 |||||| |||| | | || | |||||||||||||| || || ||| ||| Sbjct 22700 ATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCC 22641 Query 153294 TCGCGTTGGGCCAGTTCGCAGCTA-GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGAT 153352 || | |||| || || | | ||||| | |||| | |||| ||||| ||| || Sbjct 22640 TCCTCCTTCGCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAAT 22582 Query 153353 TTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGC 153412 | || | ||| ||| | || || | |||| |||||||| | ||||| Sbjct 22581 CTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGC 22522 Query 153413 GTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGC 153472 || ||||| ||||| | || | ||||| || || | | ||||||||| | ||| Sbjct 22521 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGC 22462 Query 153473 GCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTT 153532 || | | || |||| ||||| ||||| | ||| |||||||| | | || Sbjct 22461 CGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTT 22402 Query 153533 AGTTATCGCCTTA-AGTTTCTCGAAATCATAGGTCATTTCG----TCGACGCGT--ACGC 153585 || | ||| || || || | ||| ||| ||| || | ||| ||| Sbjct 22401 CGTGA-CGCTGTAGAGCAGCTGGTGATC------CATCTCGCGCTTCTCCTCGTTCACGA 22349 Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACT 153645 | ||| || || || || || || || || ||||| ||||| |||| | |||||| Sbjct 22348 AGCGAGGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACT 22289 Query 153646 GCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTT 153705 ||| ||||||| ||| ||||| |||||| || ||| | || | ||| || | Sbjct 22288 CCACAATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACT 22229 Query 153706 TGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGA 153765 ||| |||||||| || ||| |||| ||| | || |||| ||||||| |||| || | Sbjct 22228 TGCTGTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAA 22169 Query 153766 CGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCT 153822 ||| |||| || |||||||| | | | |||| |||||| || ||| Sbjct 22168 GGATCGCGAACCA---CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCTTCCTTCT 22112 Query 153823 CGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACAC- 153881 |||| ||||||||||| || |||||||| ||||||||||||||| || || || || Sbjct 22111 CGTAGCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATG 22052 Query 153882 TGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCC 153941 || | |||| |||||||| |||| | | ||| || || || ||||||||| || Sbjct 22051 TGCT-CGGATCCATCAGCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCT 21993 Query 153942 GGCACCCAGAGCGCGTACATGAGGTCGCG--CGCCTTGCAATCCTCCGCGCCCATGTTGC 153999 || | ||| |||||||| | |||||| || ||| || || ||| ||| |||||| Sbjct 21992 GGGATCCACAGCGCGTAAAAGAGGTCACGGGCGCGCTGG--TCGTCCTTGCCAGTGTTGC 21935 Query 154000 GTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGG 154059 | ||||| | | || |||||||||||||||| || |||| ||| ||||| | || Sbjct 21934 GCTTCAGCAGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGG 21875 Query 154060 CACCTTTACGCTT---TCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCA 154116 | || || ||||| |||||||| || |||| ||| | | |||||||||||||| | Sbjct 21874 CGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTA 21815 Query 154117 CCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGC 154176 ||| || |||| || | | |||||||| || ||| | ||||||| || || Sbjct 21814 GCATCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGC 21755 Query 154177 GCACTTGATGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAGTC 154234 | | | ||||||| | |||||||||||| |||| | ||| | ||| | ||||| || Sbjct 21754 GGATGTTGTGCACGTGCAGGCCAATGCCGCCGGCCG--CCTTGCTGATGACTGCGCACTC 21697 Query 154235 GCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGA 154294 |||||| ||| |||||||||||||| ||||| | ||| |||||| ||||| Sbjct 21696 CTTCAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGA 21637 Query 154295 ACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-AAACA 154353 | ||| ||||| | |||| || || |||||||| || | |||||||| || | Sbjct 21636 GCTCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAA 21577 Query 154354 GTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGC 154413 | || | ||||| | ||| || ||| || || | || ||| | || |||| Sbjct 21576 GCCCTTCG-ACATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGC 21518 Query 154414 CGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCG 154451 |||| || ||||||| || | ||||||||||| ||| Sbjct 21517 CGAGGGCAACGCGCAGGAAAAGCTGCTGCGGACGCTCG 21480 >seq5671 Length=8019 Score = 172 bits (190), Expect = 5e-38 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 7601 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 7660 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| ||||| |||| | | | | || || || | || | Sbjct 7661 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 7720 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || |||||| ||||| ||||| | | |||||||||||| Sbjct 7721 GAG-ATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 7779 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | |||||||||||| | ||| ||| ||||||||||||| |||||||| Sbjct 7780 GCGA-CTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGAC 7837 Query 52719 CGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTT 52777 || ||| | || ||| |||| | ||| ||| ||||| ||| | ||||| || || Sbjct 7838 CGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTT 7896 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 7897 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 7956 Query 52838 TAAG 52841 | || Sbjct 7957 TCAG 7960 >seq4524 Length=6481 Score = 172 bits (190), Expect = 5e-38 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 5947 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 5888 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| ||||| |||| | | | | || || || | || | Sbjct 5887 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 5828 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || |||||| ||||| ||||| | | |||||||||||| Sbjct 5827 GAG-ATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 5769 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | |||||||||||| | ||| ||| ||||||||||||| |||||||| Sbjct 5768 GCGA-CTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGAC 5711 Query 52719 CGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTT 52777 || ||| | || ||| |||| | ||| ||| ||||| ||| | ||||| || || Sbjct 5710 CGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTT 5652 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 5651 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 5592 Query 52838 TAAG 52841 | || Sbjct 5591 TCAG 5588 >seq3161 Length=4752 Score = 172 bits (190), Expect = 5e-38 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 535 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 594 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| ||||| |||| | | | | || || || | || | Sbjct 595 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 654 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || |||||| ||||| ||||| | | |||||||||||| Sbjct 655 GAG-ATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 713 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | |||||||||||| | ||| ||| ||||||||||||| |||||||| Sbjct 714 GCGA-CTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGAC 771 Query 52719 CGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTT 52777 || ||| | || ||| |||| | ||| ||| ||||| ||| | ||||| || || Sbjct 772 CGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTT 830 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 831 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 890 Query 52838 TAAG 52841 | || Sbjct 891 TCAG 894 >seq3160 Length=11589 Score = 172 bits (190), Expect = 5e-38 Identities = 263/364 (72%), Gaps = 8/364 (2%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || |||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 419 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 360 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 ||||||||||| ||||| |||| | | | | || || || | || | Sbjct 359 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 300 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || || |||||| ||||| ||||| | | |||||||||||| Sbjct 299 GAG-ATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGCTGCCGGT 241 Query 52661 -CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGAT 52718 ||| ||| | |||||||||||| | ||| ||| ||||||||||||| |||||||| Sbjct 240 GCGA-CTGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGGAC 183 Query 52719 CGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTT 52777 || ||| | || ||| |||| | ||| ||| ||||| ||| | ||||| || || Sbjct 182 CGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCGTTCGACTT 124 Query 52778 TATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||| | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 123 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 64 Query 52838 TAAG 52841 | || Sbjct 63 TCAG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496225000424880