Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5671 107 2e-18 seq4524 107 2e-18 seq3161 107 2e-18 seq3160 107 2e-18 >seq5671 Length=8019 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 7521 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 7579 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 7580 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 7639 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 7640 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 7699 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 7700 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 7758 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 7759 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 7818 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 7819 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 7875 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 7876 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 7935 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 7936 CGAGAAGAAGGTGGGCGAGTAT 7957 >seq4524 Length=6481 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 6027 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 5969 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 5968 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 5909 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 5908 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 5849 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 5848 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 5790 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 5789 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 5730 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 5729 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 5673 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 5672 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 5613 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 5612 CGAGAAGAAGGTGGGCGAGTAT 5591 >seq3161 Length=4752 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 455 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 513 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 514 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 573 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 574 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 633 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 634 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 692 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 693 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 752 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 753 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 809 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 810 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 869 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 870 CGAGAAGAAGGTGGGCGAGTAT 891 >seq3160 Length=11589 Score = 107 bits (118), Expect = 2e-18 Identities = 293/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Minus Query 47143 TGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTT 47201 |||||| ||||| || |||||| ||||||||||||| || |||| | | || Sbjct 499 TGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCG-CTCTGTTC 441 Query 47202 TACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGA 47261 | |||| | || | ||||| || || ||||| ||||||||||| |||||| | Sbjct 440 TGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGC 381 Query 47262 GACGAAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAG 47321 ||||| ||||||||||| ||||||| || || |||||||| || | || ||| Sbjct 380 GACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAG 321 Query 47322 TTGGACGTGCCCAC-CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 | | || || | ||| || || | | || || || ||| ||| ||||| Sbjct 320 CT-GCCGCGCGAGCGCGTGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTT 262 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 || ||| || ||||| | | | || ||||||||||| ||||| |||| Sbjct 261 CATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTA 202 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 |||||| || || || ||||| ||||| || ||| | | ||| || ||| Sbjct 201 CATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCT---GGGGCTGGAGAAGCACTACAA 145 Query 47501 CGAGA---ATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTT 47557 || || | || ||||| || ||| | | || ||||| |||||||||| ||||| || Sbjct 144 CGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTT 85 Query 47558 CGAGAAGCGCGTCGGCGAATAT 47579 ||||||| || ||||| ||| Sbjct 84 CGAGAAGAAGGTGGGCGAGTAT 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475464965070960