Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5482 122 8e-23 >seq5482 Length=23815 Score = 122 bits (134), Expect = 8e-23 Identities = 410/628 (65%), Gaps = 13/628 (2%) Strand=Plus/Plus Query 122926 TCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCG-AC-CGAAACTTA 122983 || ||||||| || | ||| | || | |||| | ||||| ||| || ||| || || Sbjct 21500 TCCTGCGCGTTGCCCTCGGCATCCATGTCGACGACCT-GAAAA-GCGTACGCGAGACCTA 21557 Query 122984 CGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCAC 123043 ||| |||||||| | || ||||||||||| | || || | ||| ||||||||| Sbjct 21558 CGACTTGATGTCGAAGGGCTTCTTCACGCACGCCACCCCGACCCTCTTCAACGCCGGCAC 21617 Query 123044 GAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGG 123103 | | ||| ||| || ||||| || ||| || ||| | || ||||||||| ||| Sbjct 21618 GCCGAAGCCGCAGATGAGCTCGTGCTTCTTGGTCGCCTCGAAGGACGACAGCATCGACGG 21677 Query 123104 TATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGT 123163 || || || || || || ||||| | || ||| | ||||||||| ||| | Sbjct 21678 CATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCGGCCGGCGGCATTGGCCT 21737 Query 123164 GAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGGAA--TCGCC 123221 | |||||||| || | | | ||| ||| |||| |||| |||| | ||| Sbjct 21738 GCACGTGCACAACATCCGCTCCGCCGGCAGCTACATCGCCGGCACGAACGGCACGTCGAA 21797 Query 123222 TCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGC 123281 | ||||| | | ||||| || || | ||| ||| | | || |||| ||||||||| Sbjct 21798 T--GGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCCCGCTACGTGGACCAGGGC 21855 Query 123282 GGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTAC 123338 ||| || ||||| ||||| | || | || || || |||||||||| || | | | Sbjct 21856 GGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGGCACGCCGACATCTTC 21915 Query 123339 GATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTG 123398 | || || | || ||||||| || ||| || || ||||| || | || Sbjct 21916 GGCTTCTTGCTGCTGAAGCGCAACACTGGCAAGGACGACCAGCGCGCCCGTGACCTCTTT 21975 Query 123399 TACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCG 123458 ||||| | ||| | || || |||| ||| || || || ||| ||| |||| || Sbjct 21976 TACGCGCTGTGGATCCCAGACCTGTTCATGAAGCGTGTGAAGAGCGAGGGCAAGTGGACG 22035 Query 123459 CTCATGTGTCCCGATC-GGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGA 123517 || ||| | |||| | || || || |||||||| |||||| | ||||||| Sbjct 22036 CTGATG-GATCCGAGCACATGCCCGGGGCTGAGCGACTGCTACGGCGAGGAGTTTGAACG 22094 Query 123518 GTTGTACGCGCAATACGAGCGCGAAGGC 123545 |||||| || |||||| |||||| Sbjct 22095 CCTGTACGAGCGCTACGAGAAGGAAGGC 22122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969135908840