Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5482 203 4e-47 seq5671 113 6e-20 seq4524 113 6e-20 seq3161 113 6e-20 seq3160 113 6e-20 >seq5482 Length=23815 Score = 203 bits (224), Expect = 4e-47 Identities = 858/1335 (64%), Gaps = 35/1335 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||| | ||||| |||||||| || || || | ||| || | || || Sbjct 22871 TAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGAC 22812 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| | ||| |||||| | || ||| | | | ||| Sbjct 22811 GCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCC 22752 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTCCCACATATCAAA 116075 || || ||||||||| || | ||| | || | || |||||| || || Sbjct 22751 TTCAGACTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTCGAA 22693 Query 116076 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 116135 ||| ||||| || ||| || || |||| || ||||| || |||||||| ||| Sbjct 22692 CTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTT 22633 Query 116136 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATT 116195 ||||| || |||||| | || ||| || || ||||| ||||| ||| || Sbjct 22632 CGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTT 22573 Query 116196 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || || ||||| | | || | || || ||| || || ||||||| || Sbjct 22572 CACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAG 22513 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 || || || || | ||| | ||||| | | ||| || || || |||||||| Sbjct 22512 GCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGCCGTCTCCAC 22453 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || | || | ||||| || | || || || |||| ||| |||| Sbjct 22452 CGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACGCT 22393 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 | ||| | || ||| | ||| |||| || || || | ||| || ||||| Sbjct 22392 GTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCGAT 22333 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || || || || ||||| | |||||| || |||||||| | ||| || || || Sbjct 22332 CGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCA 22273 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 || || || | || || ||||| | |||||| || || ||||| |||| |||||||| Sbjct 22272 CAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCATC 22213 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 ||||||||| || | ||| |||||||| | || |||| || || || ||| || Sbjct 22212 CTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACAC 22153 Query 116616 AT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | | ||| |||| | || | | || || |||| |||||| ||| ||| Sbjct 22152 CTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCTTCCTTCTCGTAGCGCTCGTACAGGC 22094 Query 116675 CCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCT-GGACAGAAGA 116731 |||||||| || || ||| | || ||||| || || | || ||| | | Sbjct 22093 GTTCAAACTCCTCGCCGTAGCAGTCGCT--CAGCCCCGG-GCATGTGCTCGGATCCATCA 22037 Query 116732 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 | | ||| ||| || | ||| || || ||||||||||| |||||||||||||| ||||| Sbjct 22036 GCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAGCGCG 21978 Query 116791 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | ||||| || || ||| ||| || || | || ||| | || | ||| | Sbjct 21977 TAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCAGTGTTGCGCTTCAGCAGCAAGA 21920 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 || | | ||| || ||||||||||| || |||||||| |||| | |||||||| || Sbjct 21919 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 21860 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || || | || || ||| || ||||| ||||| || | | | Sbjct 21859 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 21800 Query 116966 CATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGAT 117023 ||| || ||| || || || ||| || | | | || | || | ||| | Sbjct 21799 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGCAC 21742 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 ||||| ||||| || || ||| ||| ||| |||||||||| | || | |||| Sbjct 21741 GTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTA 21682 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGTGG 117140 || || ||||| ||| |||| |||| | ||||| |||| ||| || || Sbjct 21681 AATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGG 21625 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 | | || || || |||||||||||||| || || ||||| |||| | || | ||||| Sbjct 21624 CTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACAT 21565 Query 117201 CTTATCGTAGGTCTC 117215 | ||||||||||| Sbjct 21564 CAAGTCGTAGGTCTC 21550 >seq5671 Length=8019 Score = 113 bits (124), Expect = 6e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 7665 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 7606 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 7605 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 7546 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || ||| | Sbjct 7545 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATC 7489 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 7488 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 7436 >seq4524 Length=6481 Score = 113 bits (124), Expect = 6e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 5883 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 5942 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 5943 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 6002 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || ||| | Sbjct 6003 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATC 6059 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 6060 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 6112 >seq3161 Length=4752 Score = 113 bits (124), Expect = 6e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 599 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 540 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 539 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 480 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || ||| | Sbjct 479 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATC 423 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 422 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 370 >seq3160 Length=11589 Score = 113 bits (124), Expect = 6e-20 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || |||||||| || ||||| || || || ||| ||| || Sbjct 355 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 414 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| || || |||||||||| |||||| | || || || || || ||||||||||| Sbjct 415 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 474 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| |||||| | | || ||||| || | || | || ||| | Sbjct 475 CCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATC 531 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||| || |||||||| |||||| |||| ||| || |||| ||||||||||| Sbjct 532 CACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613460964563640