Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5482 145 1e-29 seq5671 134 2e-26 seq4524 134 2e-26 seq3161 134 2e-26 seq3160 134 2e-26 >seq5482 Length=23815 Score = 145 bits (160), Expect = 1e-29 Identities = 552/857 (64%), Gaps = 16/857 (2%) Strand=Plus/Minus Query 204844 GGCCAGATTGCACACCGCGGGTCTG-TGTGGCTCGCTCACCTCCACGATCTCGGTGCACA 204902 ||| || |||||||| |||| ||| | ||| | | |||||| ||||||||||||| Sbjct 22329 GGCGAGGTTGCACACGGCGG-TCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCACA 22271 Query 204903 AGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCT 204962 ||| ||| || | | || | | || |||||| ||||||| ||| || | |||| Sbjct 22270 GGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCATCCT 22211 Query 204963 TGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAATT 205022 |||| | ||||| |||| || |||| ||||| || || || | ||||| | Sbjct 22210 TGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACACCT 22151 Query 205023 CGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCA 205082 | | |||| | || |||| |||| |||||| |||||| Sbjct 22150 CCTGCGCCTGGATCGTCTGCACGCCGCGGCCTTCCTTCTCGTAGCGCTCGTACAGGCGTT 22091 Query 205083 CAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACC 205142 |||| || ||||| ||| ||||||| || ||| | | ||| |||||| | || Sbjct 22090 CAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCTCGGATCCATCAGCGTCC 22031 Query 205143 ACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACA 205202 || | ||| ||||| | || ||| |||||||| ||||||||| ||||||| | Sbjct 22030 ACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCCACAGCGCGTAAAAGA 21971 Query 205203 GATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCA--AGCCGC 205260 | |||||||| | |||| | ||| ||| |||| |||| | ||||| Sbjct 21970 GGTCACGGGCGCGCTGGTCGTCCTTGCCAGTGTTGCGCTTCAG---CAGCAAGAAGCCGA 21914 Query 205261 A-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCAC 205319 | |||||||||||||||||||| | ||||||| | ||||| | ||| || | Sbjct 21913 AGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGC 21854 Query 205320 CCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGG 205379 |||||||||| ||| | | |||||| || || |||||||||||||| || || | Sbjct 21853 CCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCCCATTCG 21794 Query 205380 CGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGC 205439 || |||||||||| | |||| ||| | | | | |||| | | | || Sbjct 21793 ACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGC 21734 Query 205440 CAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTG 205499 |||| ||||| | |||| ||| |||||||| | ||| || ||| ||||| Sbjct 21733 CAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTAAATGCCGT 21674 Query 205500 CGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTGGTG 205558 ||||| |||||| | | |||| ||||||| || || ||| | ||| Sbjct 21673 CGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGCGGCTTCG-GCGTG 21615 Query 205559 CCCGCGTGGAAGAGCGTGGGGCTGGCGTG---GCTGAAGCGCTTCTCGCTCAAACACCTG 205615 || |||| |||||| || ||| ||||||| | ||||| |||| ||| | | Sbjct 21614 CCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACATCA---AGTCG 21558 Query 205616 TAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAG 205675 |||||||| | ||||| | ||| ||| | | || || || | ||| | | || ||| Sbjct 21557 TAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCGAGGGCAACGCGCAGGAAA 21498 Query 205676 AGGTGTTGAGGTCTCTC 205692 || || || || | ||| Sbjct 21497 AGCTGCTGCGGACGCTC 21481 >seq5671 Length=8019 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 7948 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 7889 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 7888 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 7829 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 7828 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 7770 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 7769 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 7710 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 7709 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 7650 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 7649 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 7590 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 7589 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 7531 Query 160061 AA 160062 || Sbjct 7530 AA 7529 >seq4524 Length=6481 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 5600 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 5659 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 5660 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 5719 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 5720 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 5778 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 5779 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 5838 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 5839 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 5898 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 5899 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 5958 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 5959 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 6017 Query 160061 AA 160062 || Sbjct 6018 AA 6019 >seq3161 Length=4752 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 882 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 823 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 822 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 763 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 762 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 704 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 703 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 644 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 643 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 584 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 583 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 524 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 523 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 465 Query 160061 AA 160062 || Sbjct 464 AA 463 >seq3160 Length=11589 Score = 134 bits (148), Expect = 2e-26 Identities = 286/422 (68%), Gaps = 4/422 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 72 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 131 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| | || || | | |||| || ||| ||||| Sbjct 132 CGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGCGATACAAGCAGCCGGTCCGCCAC 191 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| | || ||| || || | ||| | || || |||| Sbjct 192 GAACTCGATGTA-CTGCGCCATCAGGTCCGCGTTCATGCCGATCAGTCGCACCGGCAGCG 250 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 251 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTCCAGCACGCGCT 310 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||||||||| ||||| Sbjct 311 CGCGCGGCAGCTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACGCAAAGTCCGTGTGCA 370 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | || || ||||| | ||| ||| Sbjct 371 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGGCATCAGCCCGCGCT 430 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| || ||| | | || ||||| |||||||| ||||| Sbjct 431 TCTTCAGCCAGAACA-GAGCGCAGAACGACCCCGAGAAGAAGATGCCCTCCACCGCCGCG 489 Query 160061 AA 160062 || Sbjct 490 AA 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795095275116240