Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5671 334 8e-87 seq4524 334 8e-87 seq3161 334 8e-87 seq3160 334 8e-87 >seq5671 Length=8019 Score = 334 bits (370), Expect = 8e-87 Identities = 581/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || ||||| ||||||||||| ||||| || || || || || |||| Sbjct 7975 CATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 7916 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | |||||||||||| | | | Sbjct 7915 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 7857 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||| ||| | | ||| Sbjct 7856 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 7797 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 7796 TCATG-CCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 7739 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 7738 CGCGTCTACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGTGT 7680 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||||||||| | || || || ||||||| Sbjct 7679 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 7620 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 7619 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 7560 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | ||| Sbjct 7559 CCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCTC 7500 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 7499 C---GCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 7443 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 7442 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 7384 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || |||||||| ||| Sbjct 7383 ACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACGCGCGC 7324 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| | ||||||||| Sbjct 7323 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGGTTCTCGATCACGATGCCG 7264 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 7263 TCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 7204 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 7203 TTCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 7154 >seq4524 Length=6481 Score = 334 bits (370), Expect = 8e-87 Identities = 581/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || ||||| ||||||||||| ||||| || || || || || |||| Sbjct 5573 CATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 5632 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | |||||||||||| | | | Sbjct 5633 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 5691 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||| ||| | | ||| Sbjct 5692 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 5751 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 5752 TCATG-CCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 5809 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 5810 CGCGTCTACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGTGT 5868 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||||||||| | || || || ||||||| Sbjct 5869 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 5928 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 5929 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 5988 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | ||| Sbjct 5989 CCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCTC 6048 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 6049 C---GCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 6105 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 6106 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 6164 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || |||||||| ||| Sbjct 6165 ACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACGCGCGC 6224 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| | ||||||||| Sbjct 6225 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGGTTCTCGATCACGATGCCG 6284 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 6285 TCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 6344 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 6345 TTCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 6394 >seq3161 Length=4752 Score = 334 bits (370), Expect = 8e-87 Identities = 581/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || ||||| ||||||||||| ||||| || || || || || |||| Sbjct 909 CATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 850 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | |||||||||||| | | | Sbjct 849 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 791 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||| ||| | | ||| Sbjct 790 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 731 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 730 TCATG-CCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 673 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 672 CGCGTCTACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGTGT 614 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||||||||| | || || || ||||||| Sbjct 613 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 554 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 553 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 494 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | ||| Sbjct 493 CCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCTC 434 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 433 C---GCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 377 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 376 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 318 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || |||||||| ||| Sbjct 317 ACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACGCGCGC 258 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| | ||||||||| Sbjct 257 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGGTTCTCGATCACGATGCCG 198 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 197 TCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 138 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 137 TTCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 88 >seq3160 Length=11589 Score = 334 bits (370), Expect = 8e-87 Identities = 581/830 (70%), Gaps = 16/830 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || ||||| ||||||||||| ||||| || || || || || |||| Sbjct 45 CATCACGCCGGCCTTCTGATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTG 104 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || || || | | |||||||||||| | | | Sbjct 105 CAGCGAGATCATCTCCATGAAGTCGAACGGCTGCGTCACGTTGTAGTGCTTC-TCCAGCC 163 Query 132711 C-AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAA 132768 | || || ||||||| ||| ||||||||||||||||| |||| ||| | | ||| Sbjct 164 CCAGCGATACAAGCAGCCGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGT 223 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 | | | || | ||| |||||||||||||| ||| || ||| || |||||||| || Sbjct 224 TCATG-CCGATCAGTCGCACCGGCAGCGCGTCGCAGATGAACTCGC-GCTCGATGTTCAC 281 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCT-CGGCCGTTGCACCAAATGC---T 132883 |||||| || ||| ||| |||||| | |||| | || ||| | ||| | Sbjct 282 CGCGTCTACGATGATCTCCAGCACGCGCTC-GCGCGGCAGCTTGTGCTTGATGTGCGTGT 340 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| |||||||| |||| ||||||||| | || || || ||||||| Sbjct 341 TGTACAGCAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGC 400 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| |||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 401 TGAACGTCAGCCCAGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACC 460 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 |||| ||||||| |||||| || |||||||| | | ||| ||||| ||| | ||| Sbjct 461 CCGAGAAGAAGATGCCCTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAAGCTCGCTC 520 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | |||| | ||||| |||| |||||| || ||||| | | || |||||| ||||| | Sbjct 521 C---GCTGCCAATCCACCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCT 577 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC-ACGTAGGTGTCGATGAGG 133182 ||| |||| || || || || ||||| || | | || | ||| ||||| | || Sbjct 578 GGATCGCGTGCAGCAGCCGCAGCTTCTCCTC-GCTGTCCGTGATGTACGTGTCCAGCAGC 636 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 ||| ||| | || ||||| | ||||||||| | || || |||||||| ||| Sbjct 637 ACCGAGTACGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAACCCGTAAAACGCGCGC 696 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || ||| |||| | || || ||| | ||||||||| Sbjct 697 GCCTCCGGCACCTTCACGTCGCTCATGAAGCGCTGCGCAAGGTTCTCGATCACGATGCCG 756 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 |||||| | ||||| ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 757 TCGCTGCCTGCGAAGAAGGCAAGCACGTGCTTGATGAAGTGCCGCTCCCCGTCGTTCAGC 816 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 | ||||||| | |||| ||| |||||| | |||||| | ||||| Sbjct 817 TTCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCCAGCGTCCA 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500135105727360