Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3121 228 1e-54 seq5895 178 2e-39 seq5482 82.4 1e-10 >seq3121 Length=7647 Score = 228 bits (252), Expect = 1e-54 Identities = 788/1218 (65%), Gaps = 21/1218 (2%) Strand=Plus/Minus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || ||||| | || |||||||| || | | || | || || Sbjct 1209 CGTCGAGAAGATCTGGCTCTTCTTCGTCGGGATCGTCGTGTTGCGCTTGATCAGCGCCGT 1150 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | || || || || | || || | ||| || |||||||||| || | ||| Sbjct 1149 CATCACGCCGCCGGCCGTCTCAATGCCCAGCGTCAGCGGCGTCACGTCCAGCAGCAGCAG 1090 Query 6988 GTCTTGAACAGATTCGTTCCCTTCAC-CCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCG 7045 | | | | | | | | ||| | ||| | ||| || ||| || |||| || ||| Sbjct 1089 GCCCTC--CGTCTGCTTGCTCTTGCCGCCGGTCAGAATGAAGGCCTGAACCGCAGCGCCG 1032 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || ||||| |||||||| || | || ||||| || || ||| || | ||| Sbjct 1031 TACGCCACGGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGCCGAAGAAGTCC 972 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || | |||||||| || || || || || |||| |||| || | | Sbjct 971 GACACAAGGCTCTGCACCTTCGGGATACGCGTGGAGCCGCCCACCAGCACGACATCGTGC 912 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || ||||| | ||| | || || || || | || | Sbjct 911 ACGGAGCGCTTGTCCATCTTCGCGTCCTGGAGCACGCGCTCCACCGGCTGGATCGTGCTG 852 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| ||| ||||| ||||| || || || || || || | | | ||| || Sbjct 851 CGGAACAGGTCGCCGCACAGCTCCTCGAAGCGCGCGCGCGTGATCGTGGCCTGGAAGTCC 792 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 ||| |||| | | | || || || | || | || | || || || | ||| ||| Sbjct 791 ACGTTGTCGAACAGTGCGTCGATCTCGACCGTCGCCTGCGTCGCGGACGACAGCGTGCGC 732 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || |||||||| |||||||| || | ||| || || || || || | || | || Sbjct 731 TTGGCGCGCTCGCACGCCGTGCGCAGACGGCGCAGCGCGCGGTGGCTCGACGACAGGTCC 672 Query 7406 TT---CTTATGTTTACGTTTAAACTCTTCAGAGAAGT--GTCGAAGGAGTCTCGAATCGA 7460 || ||| | || || || ||||| || |||| ||| | || | ||||| Sbjct 671 TTGCCCTTGTTCTTGCGCTTGAACTCCTCGCTGAAGAACGTC--ACCAGCCGGTTATCGA 614 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || || ||||| | ||| || || || ||||| || || || ||||| || || | Sbjct 613 AGTCCTCGCCACCGAGGTGGGTGTCGCCGTTCGTCGCCTTCACCTCGAAGATGCCGCCGT 554 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 | || | | || || ||||| ||||| || || |||||||| || || || ||||| Sbjct 553 CGATCGTCAGCAGCGTCACATCGAACGTGCCGCCGCCCAGGTCGAAGATCAGCACGTTGC 494 Query 7581 TATCGT---CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 || | |||| | | ||| || || ||||||||||| || |||||||| || |||| Sbjct 493 GCTCCTTGCCGTCGTCGCCCTTGTCCAGGCCGTACGCGATGGCGGCCGCCGTCGGCTCAT 434 Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 | || || || || | ||| || ||||| || | ||||| |||||||| || || | Sbjct 433 TGATGATGCGCAGCACCTCCAGACCTGCAATCGTGCCGGCATCCTTCGTCGCCTGACGCT 374 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 |||| ||||| |||||||| || ||||| || || || | | | || | ||| || || | Sbjct 373 GCGAGTCGTTGAAGTAGGCGGGCACCGTCACCACGGCCTTCTTCACCTGCTTGCCAAGGT 314 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | || || | || ||||| || || |||||||| ||||| || | || | Sbjct 313 AAGCCTCGGCCGTCTCCTTCATCTTCAGCAGCACCATCGAGCTGATCTCCTCCGGCGTGA 254 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATC--CGCAGCACCGGG 7875 || ||| || |||| || | || | |||| || || || ||| | || Sbjct 253 ACGTCTTCTCCTCGCCGTGGAACTGCACCACGATCACAGGCTTGTCGTCGC-CCTTCGTC 195 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 | | ||||| | | ||| | ||||| || | || || ||| ||||| | Sbjct 194 G-TCACCTTGAAGGGCCAGTGCTTCATGTCCGCCTGCACAACGGAGTCGCTGAACTTGCG 136 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || || ||||| || || || || ||||| | |||||||| || |||||||| Sbjct 135 GCCAATCAGGCGCTTCGCGTCGAACACCGTGTTGTGCGGGTTCATCGCCACCTGGTTCTT 76 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 ||| || || ||||| ||||| || || || |||||||||||||| || ||||| Sbjct 75 CGCGGCATCGCCGATTAGACGCTC---GGAGTCGGTGAACGCGACGTACGACGGCGTCGT 19 Query 8056 TCGATTCCCTTGGTCGTT 8073 || || || |||||||| Sbjct 18 GCGGTTGCCCTGGTCGTT 1 >seq5895 Length=15380 Score = 178 bits (196), Expect = 2e-39 Identities = 368/545 (68%), Gaps = 12/545 (2%) Strand=Plus/Plus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCA 7666 ||||||||||| || |||||||| || || || || || || || ||| || || ||| Sbjct 30 CCGTACGCGATGGCGGCCGCCGTCGGCTCGTTGATGATGCGCAGCACGTTGAGACCTGCA 89 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || || | || || ||||| || || || |||| ||||| ||||| || || ||||| Sbjct 90 ATCGTGCCAGCGTCCTTCGTTGCGTGACGCTGCGCGTCGTTGAAGTACGCGGGCACCGTG 149 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 ||||| |||||| | || | | || || || | ||||| | || |||||||| Sbjct 150 ACGACAGCGTCCTTCACGGTTGTGCCAAGGTAGGCCTCCGCTGTCTCCTTCATTTTCTGC 209 Query 7787 AGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACT 7846 || ||||||| || ||||| || | ||| ||| | ||| | | || || Sbjct 210 AGCACCATCGCAGAGATCTCCTCGGGAAAGAACGTCTTCATAGAACCCTGGTACTCGACG 269 Query 7847 TCAATCATGGGTTT---ATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATA 7903 | || | || || |||| ||| | | ||||| | | ||| | ||||| Sbjct 270 TTGATGACCGGCTTGCCATCCTT--CACGG----TCACCTTGAAAGGCCAGTGCTTCATG 323 Query 7904 TCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACT 7963 || | || | | |||| |||||| | ||||| | ||||| || || || | Sbjct 324 TCCGCCTGCAGGTCCGGGTCGTCAAACTTGCGGCCGATCATCCGCTTCGCGTCGAAGATG 383 Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| | || ||||| || || |||||||| || || |||| || || || | Sbjct 384 GTGTTGTGCGGATTCATCGCCACCTGATTCTTCGCGGCATCGCCGACGAGGCGCTCTGTC 443 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | |||| |||||||||||||| || ||||| || || || ||||||||||| || || Sbjct 444 T---CCGTGAACGCGACGTACGACGGCGTCGTGCGGTTGCCCTGGTCGTTCGCGATGATC 500 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCG 8143 || || ||||||| | |||||||||| ||||| ||||| || || | ||||||||| Sbjct 501 TCGACCTGGTCGTTCTTGAAGACGCCGACACACGAGTACGTCGTGCCCAGGTCAATACCG 560 Query 8144 ATTGC 8148 || || Sbjct 561 ATGGC 565 >seq5482 Length=23815 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 105825 GTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGT 105884 ||| ||||| | ||||| || || ||| ||| ||||| || ||||| || | || Sbjct 21747 GTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGT 21688 Query 105885 ATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTG 105944 ||||||||| |||||||| || || ||||| || | || ||| ||||| ||| || Sbjct 21687 ATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTG 21628 Query 105945 TGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGA 106004 || | || || || || ||||| || || || || || || |||| || || ||||| Sbjct 21627 CGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGA 21568 Query 106005 TAACGCTTCGTATGTTTC 106022 | | ||||| || || Sbjct 21567 CATCAAGTCGTAGGTCTC 21550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635084934804360