Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5482 174 2e-38 seq5460 84.2 3e-11 seq4297 84.2 3e-11 >seq5482 Length=23815 Score = 174 bits (192), Expect = 2e-38 Identities = 1078/1707 (63%), Gaps = 49/1707 (3%) Strand=Plus/Minus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 |||||||| ||| || || |||| ||||| ||||| || || ||| | ||| | | Sbjct 23226 CGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAGAAGAG 23167 Query 109458 CATTGAAGAGAGTTTGGAAAGTG-TCGGACTCTCCATAAACAAGTTCATCGACTGAGACT 109516 ||| || | || | ||| | | |||| |||| || |||| ||||| |||||| |||| Sbjct 23166 CATCGACGTGA-TCTGGCCCGAGGTCGGGCTCTGCAGGAACAGGTTCAACGACTGCGACT 23108 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTT 109573 | |||||| | | || || || ||||||||||| | | | || | | ||| | Sbjct 23107 GGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGG---AATCT 23051 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| || || ||| | | ||||| || ||||| ||| | | || | | || | Sbjct 23050 CCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAGGATGG 22991 Query 109634 AGCCACCAGCCTTCACCATGAGAT-----CCTT---CATCTCTTTCGA-CCAGAGACCGA 109684 |||| || | ||||||| | || |||| | ||| ||| || ||| Sbjct 22990 AGCCG------TTGA--ATGAGATGATCTCGTTGCGCATCG-TCTCGTTCCACAGGCCGC 22940 Query 109685 CCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAG-CAAGTGTG 109743 |||| || || || | |||||| ||||| || || ||| |||| Sbjct 22939 GTCGGATGAGGTCCATCACGAGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACA- 22881 Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 || || | ||||||||| | ||| |||| ||||| ||||| || ||||| ||||| || Sbjct 22880 CGGCGTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGC 22821 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTT 109863 | || || || |||||||| || |||| | || ||| || | || | | | Sbjct 22820 GACGTCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATC 22761 Query 109864 ACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC--CC 109921 ||| ||| || |||||| || | || || || || | | || || Sbjct 22760 ACCTTCTCCTTCAGACTGTCCCAGTCCCAGCGGCCGCTG--TTCGGGCGGGGGTTCTTCC 22703 Query 109922 ACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACC 109981 |||| || || || | |||| || ||| |||||||| ||||||||| | Sbjct 22702 ACATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGC 22643 Query 109982 CCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAA 110041 |||| ||| |||| ||| || ||||| | || || || || ||||| |||| Sbjct 22642 CCTCCTCCTTCGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAA 22583 Query 110042 TATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGAC-CACAAAGAATAAAC 110100 | | ||| |||| | | |||| ||| | ||||||| || | || |||| | || Sbjct 22582 TCTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGA-TGAAG 22524 Query 110101 ACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGA 110160 ||||||| || ||||| || || | || | ||||| | |||||| ||| || Sbjct 22523 GCATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGC 22464 Query 110161 GCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTC 110220 || || || || ||||| |||||||||||||||| || || || || || | | Sbjct 22463 GCCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGC 22404 Query 110221 TTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTG 110280 ||||||| | ||| | || ||| | | | |||||| || || | Sbjct 22403 TTCGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGA 22344 Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || || || || || || || |||||||| | ||||| || |||||| |||| | Sbjct 22343 GGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACA 22284 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || || || |||| ||| || | || || || | ||||||||| ||||| ||| | Sbjct 22283 ATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTG 22224 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| |||||||| ||||| ||| | || || || || |||| |||| || || Sbjct 22223 TTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATC 22164 Query 110461 GCCTTCCATACAT-CGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 || ||| || | | ||| | || | ||| || | ||||||| |||||| Sbjct 22163 GCGAACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCTTCCTTCTCGTAGCG 22105 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCT-TGTCGG 110578 ||||| | ||||| |||| ||||| || || ||| || | || | Sbjct 22104 CTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAG-CCCCGGGCATGTGCTCG 22046 Query 110579 GACAGAAGAGGGACCAATT-TCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATC 110637 || | || | ||| || || | ||| || || | ||||||||||||||| || ||| Sbjct 22045 GATCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATC 21987 Query 110638 CACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGC 110697 |||| ||| | || ||||||||| || || || | || |||| | ||| Sbjct 21986 CACAGCGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCAGTGTTGCGCTTCAGC 21927 Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 ||| ||| | | ||| || | |||||| || || || || || |||| || ||||| Sbjct 21926 AGCAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTG 21867 Query 110758 CG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 || || || |||||| || ||||| || ||| |||||||| | ||||| || Sbjct 21866 CGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGC 21807 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGC---ACGAATG 110871 | | |||| || || || || || | || | | ||| || ||| Sbjct 21806 ACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGA---TGTAGCTGCCGGCGGAGCGGATG 21750 Query 110872 TCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGT 110931 | ||| | |||| ||||| || || ||| ||| || || ||| ||||| | || Sbjct 21749 TTGTGCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGC 21690 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 ||| | ||||| || || || || |||| ||| | | ||||| || |||| Sbjct 21689 GTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATC 21630 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG 111051 || || ||||| || || |||||||| || || || || || |||| | || | Sbjct 21629 TGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTC 21570 Query 111052 GACATCTTGTTGTATGTGTCGAGTGCG 111078 |||||| || ||| || ||| || || Sbjct 21569 GACATCAAGTCGTAGGTCTCGCGTACG 21543 >seq5460 Length=1733 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 1682 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 1623 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 1622 CTGTTGGGAGCA-CTTTT 1606 >seq4297 Length=10155 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 155 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 96 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 95 CTGTTGGGAGCA-CTTTT 79 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 396 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 455 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 456 CTGTTGGGAGCA-CTTTT 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588931613296200