Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq5663 113 6e-20 >seq5663 Length=14731 Score = 113 bits (124), Expect = 6e-20 Identities = 274/413 (66%), Gaps = 18/413 (4%) Strand=Plus/Plus Query 135780 ACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC---GGCAGGCCC 135836 ||||||||||||||||| || || || ||||| ||| |||||||| || | || | Sbjct 832 ACGTAGTTGTGGTGGCAATTTACAGCGGCCTTGGTGGTCGTGAACGGCACTGGGATGCAC 891 Query 135837 GACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAG 135896 ||| |||| ||||| | || | ||| ||||| || ||||| || ||| ||| Sbjct 892 GAC---CGCACCGCCTCTAACACGGCGTCCAGCATCAGCTGCCGGTTCCACCACGCAAAG 948 Query 135897 TCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGTTCGCCTTCGCAGAGC 135956 ||| |||| | ||||| | |||||||| ||| | || |||||| | || Sbjct 949 CGCTGTGCCCACTCCACGGCAAAAATGTAGTCGTTGAAGTGCGTCGTGCCTTCTCGCAGG 1008 Query 135957 CAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCAGCATCATCTCCTTGGCC 136016 | || | ||||| ||| || | | || | || | | | || | | || ||| Sbjct 1009 TACGCTAAGTCCTCGTCAGGCAGATGGCTCA-GTTGGGTGCCGACGTCTTTT--TTTGCC 1065 Query 136017 TTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATC 136076 ||||||||||| | |||||| |||||| || || || || |||||||| |||||| Sbjct 1066 AGCTCGATGAAGACAGAGCCGATACGGTTGCCCACCCCACGTGACCCCGAGTGCAGCATC 1125 Query 136077 ACCCAGA---------CGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCG 136127 ||||| | || ||| | || || | ||||| ||| |||||||||||||| Sbjct 1126 ACCCACACATGCGAAGCGGGCTTCTGATCATCTAAGCAGATCTCAATGAAGTGGTTGCCC 1185 Query 136128 CCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCGCCGGGTA 136180 ||| || ||||| || ||| || ||| | ||| | |||| | ||||| Sbjct 1186 GTGCCAAGAGTGCCGAGGTGGTTCAGATGGTTCGTGTTTTCCAGCACAGGGTA 1238 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/259 (69%), Gaps = 12/259 (5%) Strand=Plus/Plus Query 135447 TCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATT 135506 ||||| | ||||| ||||||| | || || || || ||||||||||| ||| || | Sbjct 418 TCCACCAAGTCCTGCTGGGCCGCAATCACGGCATCAATGTCCTTGTACGCCGCGGGCGTC 477 Query 135507 TCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGC--CTTGATCTGGT 135564 ||||| | ||| | |||||| || ||||| | ||| ||||| ||| | |||| Sbjct 478 TCGTCCAGCACACTGCTGTCCTTGCGACACTCAATCCCCGACGTGGCGGCTTCA--TGGT 535 Query 135565 CCTCCAGGGTGAAG-GTCGCCTTGGCCTGGGTCCGCGAC---ATCGTCCGGCCCGCGCCG 135620 | | ||||||||| | || | | |||| || || | | ||| || || || ||| Sbjct 536 CGGCGAGGGTGAAGCGGCGGCGT-GCCT--CACCACGGCTGTAGCGT-CGTCCGGCACCG 591 Query 135621 TGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC 135680 || ||||| |||||| | | || | |||| ||||| ||||| |||||| || Sbjct 592 TGAGAGCAGGAGCAGTAGCTGGCCTCGCTGCCTTTGCCACGCACAATGTAGCTGCGTGCA 651 Query 135681 CCCATCGAGCCGGGGATGA 135699 |||||||| ||||| |||| Sbjct 652 CCCATCGACCCGGGAATGA 670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700392012728760