Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5482 304 1e-77 seq5671 104 2e-17 seq4524 104 2e-17 seq3161 104 2e-17 seq3160 104 2e-17 >seq5482 Length=23815 Score = 304 bits (336), Expect = 1e-77 Identities = 1158/1780 (65%), Gaps = 57/1780 (3%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 ||||| | || ||||||| || |||| |||||| |||||||| || ||||| || Sbjct 23231 GCCGCCGCCTTCGTGCGCAGGTAGTACACGCCCGTCTTGAGGCCGCACTCCCACGTGTAG 23172 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGG-CTCCGCCACGAAAAGATTAAACGATTG 146690 | | ||||| || || | | | ||||| ||| || | ||| || || ||||| || Sbjct 23171 AAGAGCATCGACGTGATCTGGCCCGAGGTCGGGCTCTGC-AGGAACAGGTTCAACGACTG 23113 Query 146691 GCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCA---TGCGTTTTGTCTT 146747 || || ||| | | ||||||| ||||| || |||| |||| | || | Sbjct 23112 CGACTGGTCGATGTACTGGCCGCGGTCGCGGGCCATGTCGATCAGCTTGCGCTGTGGAAT 23053 Query 146748 CATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTG 146807 | ||||| |||| ||| ||| |||| | | || || || || ||||| | | Sbjct 23052 C---TCCCACACGGTGCGGTAGAGCTCCTTGAGGTCGTCGGGGATGCCGTCAATTGTCAG 22996 Query 146808 AATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATT-TCGGGCGTGTAAAGGTTTAGTT 146866 || ||||| ||| | | || ||| || || || | | | ||| || Sbjct 22995 GATGGAGCCGTTGAATGAGATGATCTCGTTGCGCATCGTCTCGT-TCCACAGGCCGCGTC 22937 Query 146867 TAATGAGGTC-ATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGT 146925 |||||||| |||| | |||| || ||||| | |||||||| || ||||| Sbjct 22936 GGATGAGGTCCATCACG-AGGTACTTGTTCACCACCGGGAACTCGCCACTCAAGACACGG 22878 Query 146926 CTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCC 146985 | | || | || ||||| ||||| || |||| |||||||| | || || | | Sbjct 22877 CGTACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGAC 22818 Query 146986 GTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGAT 147044 || | ||||| ||||| ||||| ||| | || || |||| ||| | ||| | Sbjct 22817 GTCGACGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATC-AC 22759 Query 147045 GTTGTCCTTCAAAGTTTGCCAGTCCCA-CATCGAC-------GAGGGCGTCACGTTCCAC 147096 || ||||||| | | | ||||||||| | | | | ||| || |||||| Sbjct 22758 CTTCTCCTTCAGACTGTCCCAGTCCCAGCGGCCGCTGTTCGGGCGGGGGTTC--TTCCAC 22701 Query 147097 ATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCG 147156 |||||| |||| || | || | |||||||||||||| ||| || ||| || Sbjct 22700 ATGTCGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCC 22641 Query 147157 TCGCGCTGCGCCAATTCACAGCTT-GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGAT 147215 || || ||||| || || | ||||| | ||| | |||| ||||| ||| || Sbjct 22640 TCCTCCTTCGCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAAT 22582 Query 147216 TTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGC 147275 | ||| | ||| ||| | || || | |||| ||||| | | ||||| Sbjct 22581 CTCAGCGTTCACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGC 22522 Query 147276 ATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCG 147334 ||| |||| ||||| | || | ||||| ||| || | || | ||||||||| || Sbjct 22521 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCAT-GTTGCTGCGGCGCG 22463 Query 147335 CGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTT 147394 | || | | || |||| |||||| || || | ||| ||||| || | | Sbjct 22462 CCGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCT 22403 Query 147395 TAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT--ACGCATTG 147452 | || | | | ||| || | ||| | || || |||| | ||| ||| | | Sbjct 22402 TCGTGACGCTGTAGAGCAGCTGGTGATCC-ATCTCGCG-CTTCTCCTCGTTCACGAAGCG 22345 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC 147512 || ||||| || || || ||||| ||||| ||||| |||| | |||||| ||| Sbjct 22344 AGGCAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCAC 22285 Query 147513 GATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCG 147572 || |||| ||||||||| |||||| || || | || | ||| || || | Sbjct 22284 AATCTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCT 22225 Query 147573 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT 147632 |||||||| || ||| |||| ||| | || |||| ||||||| |||| |||| ||| Sbjct 22224 GTTGCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGAT 22165 Query 147633 A---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTA 147689 |||| || |||||||| | | | |||| |||||| || || ||||| Sbjct 22164 CGCGAACCA---CACCTCCTGCGCCTGGATCGTCTGCACGCCGCGGCCTTCCTTCTCGTA 22108 Query 147690 CCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGAT 147748 |||||||||| || |||||||| ||||||||||| ||| || || || || || | Sbjct 22107 GCGCTCGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGGGCATGTGCT 22048 Query 147749 GCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCA 147808 |||| |||||||| |||| || | || || || || ||| ||||| || || | Sbjct 22047 -CGGATCCATCAGCGTCCACTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGA 21989 Query 147809 CCCACAGCGCGTACATAAGATCGCG--CGCTTTGCAATCCTCGGCGCCCATGTTGCGTTT 147866 |||||||||||| | || || || ||| || || || ||| ||||||| || Sbjct 21988 TCCACAGCGCGTAAAAGAGGTCACGGGCGCGCTGG--TCGTCCTTGCCAGTGTTGCGCTT 21931 Query 147867 CAA-ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCAC 147925 || | ||| | | | |||||||||||||||| || |||| ||| ||||| | || | Sbjct 21930 CAGCAGCAAGAAGCCGA-AGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGC 21872 Query 147926 CTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCA 147982 | || ||||| ||||| |||||| || | ||| | ||||||| || ||||| | || Sbjct 21871 CCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCA 21812 Query 147983 TGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCA 148042 | || |||| || ||| |||||||| ||| ||| | ||||||| || || | Sbjct 21811 TCGGCACCAGCCCATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGA 21752 Query 148043 CTTCGTGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT-ATGGCAGCGCAATCGCC 148100 | |||||||| | ||||||||||||| ||| | ||| | ||| | ||||| || Sbjct 21751 TGTTGTGCACGTGCAGGCCAATGCCGCCGGCCG--CCTTGCTGATGACTGCGCACTCCTT 21694 Query 148101 CAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACA 148160 || || ||| ||||||||||||||||||| || | | | ||| || ||||| | Sbjct 21693 CAGCGTATCGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT 21634 Query 148161 CATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--T 148218 ||| ||||| || |||| || || ||| ||||| || | |||||||| || || Sbjct 21633 CATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCC 21574 Query 148219 TTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCC 148278 || || ||||| | || ||||| || || | ||||||| | || ||||| Sbjct 21573 CTTCGA--CATCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCG 21516 Query 148279 AGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAA 148318 || || ||||||| || | ||||| || || ||| ||| Sbjct 21515 AGGGCAACGCGCAGGAAAAGCTGCTGCGGACGCTCGACAA 21476 >seq5671 Length=8019 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 7601 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 7660 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 7661 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 7719 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 7720 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 7777 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 7778 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 7835 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 7836 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 7895 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 7896 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 7955 Query 47269 ATAAG 47273 || || Sbjct 7956 ATCAG 7960 >seq4524 Length=6481 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 5947 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 5888 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 5887 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 5829 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 5828 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 5771 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 5770 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 5713 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 5712 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 5653 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 5652 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 5593 Query 47269 ATAAG 47273 || || Sbjct 5592 ATCAG 5588 >seq3161 Length=4752 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 535 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 594 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 595 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 653 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 654 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 711 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 712 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 769 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 770 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 829 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 830 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 889 Query 47269 ATAAG 47273 || || Sbjct 890 ATCAG 894 >seq3160 Length=11589 Score = 104 bits (114), Expect = 2e-17 Identities = 248/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || ||||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 419 ATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 360 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 |||||||| || ||||| |||| | | || | || | | || | || | || Sbjct 359 TTTGCGTGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 301 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | || ||||||| |||||| ||||| | ||||| |||||||| Sbjct 300 GGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCTGCCG 243 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| | ||| ||| | || || ||||| ||||||| Sbjct 242 GTGCGAC-TGATCGGCATGAACGCGGACCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 185 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | || ||| || | ||| | | || | | ||||| || | Sbjct 184 ACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCGTTCGACT 125 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || ||||| ||||||| || || || |||||||| || || |||| Sbjct 124 TCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 65 Query 47269 ATAAG 47273 || || Sbjct 64 ATCAG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575281388440