Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5505 178 2e-39 >seq5505 Length=14715 Score = 178 bits (196), Expect = 2e-39 Identities = 399/594 (67%), Gaps = 14/594 (2%) Strand=Plus/Minus Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 ||||| | |||||| || || ||||||||| ||||| || || |||||||| | || Sbjct 14113 TTCAGCGCCTCCACATGCGTGCTGTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCA 14054 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 ||||| || || ||| | | || | || || |||||||| || ||| ||| Sbjct 14053 CCCGGTCGCAGACCTGTCGCCTTCGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATG 13994 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCC 147096 || || || || || ||||||||||| | || | |||||||||| |||||| ||||| Sbjct 13993 TTAAACGGCACGCCGAGGCCCATGTCGCAGGAACGCTGGTACAGCATGCACGACAGCTCT 13934 Query 147097 C-CGTCGGC-----CACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCG 147150 ||| | |||||| ||||||| || | |||||| |||||||| ||||| | Sbjct 13933 TTCGTTTGTGTGTTCACGTAGAACTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGG 13874 Query 147151 GGCAGGTCCGCG---GGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTC 147207 || |||| |||||||| || | || | || ||| | | | |||||| | Sbjct 13873 TTCAA---CGCGCACGGGTTCCACGCGGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCC 13817 Query 147208 TTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCG 147267 | | | || | || | || | | ||| |||||||| | || ||||||||| || Sbjct 13816 CTGAGCGTCTCCACAATCGACTTGATCTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCG 13757 Query 147268 CAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCG 147327 ||| || |||| ||| || ||||| | ||||||||||||||| || || || ||||| Sbjct 13756 CAGCCCCTGTACGCGGCGCCGAAGTGACGCCACTGGAAGCCGTAGACGGGGCCGAGGTCC 13697 Query 147328 CCGGGCTTTCTGTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTC 147386 ||| | | || || || || | | | ||| ||| || | || ||| | |||| Sbjct 13696 ATTTCCTTGTTTTCCGTCAAACCGCGGCTG-TCGAGGAACGCGCGTGAGGCGTTGCCGTC 13638 Query 147387 CCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCA 147446 ||| || | ||||| | | ||| || | || ||| || || | |||||| Sbjct 13637 CCAAATATGAATGTCCTTGTCCGCCAGCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCA 13578 Query 147447 GAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGG 147500 ||||||||||| | || || | ||| ||||| | ||| || ||||||||||| Sbjct 13577 CAGCAGCTCCTCACACACGCCACGCCAGAAGACACGCTTCGTCGTCAGCAGGGG 13524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583444026885600