Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5671 87.8 6e-12 seq4524 87.8 6e-12 seq3161 87.8 6e-12 seq3160 87.8 6e-12 seq5482 86.0 2e-11 >seq5671 Length=8019 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 7577 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 7636 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 7637 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 7696 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 7697 AAGCTGCC 7704 >seq4524 Length=6481 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 5971 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 5912 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 5911 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 5852 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 5851 AAGCTGCC 5844 >seq3161 Length=4752 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 511 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 570 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 571 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 630 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 631 AAGCTGCC 638 >seq3160 Length=11589 Score = 87.8 bits (96), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 443770 TTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGT 443829 |||||| |||| ||||| || || |||| || ||||| || || ||||| |||||| Sbjct 443 TTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCG 384 Query 443830 CGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACCAAACACATCGTGCAC 443889 || |||||||| |||| ||||| || || || || |||| || |||||| |||| Sbjct 383 CGCGACGAGGGCCTGCACACGGACTTTGCGTGCCTGCTGTACAACACGCACATCAAGCAC 324 Query 443890 AAGCTGCC 443897 |||||||| Sbjct 323 AAGCTGCC 316 >seq5482 Length=23815 Score = 86.0 bits (94), Expect = 2e-11 Identities = 211/315 (67%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 254834 GAAGACAGTATCCAAGGCATCTTCGAAACGCTATCGCGATGCGCATTCGTGAGTCAATCG 254893 || ||||| ||| | ||||| | ||| ||||| | |||||| || | || | || Sbjct 21661 GACGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCG 21720 Query 254894 AGCGGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG 254953 ||||||| | || || || | |||| | ||| || ||||| || ||| | Sbjct 21721 GCCGGCGGCATTGGCCTGCACGTGCACAACATCCGCTCCGCCGGCAGCTACAT-CGCCGG 21779 Query 254954 -ACGAACGG-ACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTC 255011 |||||||| ||| | ||| | | || ||| | || || ||||||||| || | Sbjct 21780 CACGAACGGCACGTCGAATGGGC-TGGTGCCGATGCTACGCGTCTTCAACAACACTGCCC 21838 Query 255012 GCTACGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGT 255071 ||||||| || || || ||||| || ||| || || ||| || | ||||| ||||||| Sbjct 21839 GCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGT 21898 Query 255072 GGCACGCCGACATTGAACGGTTTTTACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGA 255131 ||||||||||||| | || || |||||| ||| || |||| || || | | Sbjct 21899 GGCACGCCGACATCTTCGGCTTCTTGCTGCTGAAGCGCAACACTGGCAAGGACGACCAGC 21958 Query 255132 TCGCCCGCGACATCT 255146 |||||| ||| ||| Sbjct 21959 GCGCCCGTGACCTCT 21973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588213306503905