Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5482 131 2e-25 seq5671 87.8 2e-12 seq4524 87.8 2e-12 seq3161 87.8 2e-12 seq3160 87.8 2e-12 seq2698 86.0 8e-12 seq4297 82.4 1e-10 seq2002 82.4 1e-10 >seq5482 Length=23815 Score = 131 bits (144), Expect = 2e-25 Identities = 873/1387 (63%), Gaps = 35/1387 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||| | || || ||||| || ||||| || | ||| || | || || Sbjct 22872 GTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGA 22813 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || ||||| || |||| ||| || ||| || | || || | | | || Sbjct 22812 CGCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTC 22753 Query 110827 CTTGAGAACATCCCAGTCGTAG----------TTGAGCTTGGTTTCACCTTCCCACATGT 110876 ||| ||| |||||||| || | | || || ||| | |||||||| Sbjct 22752 CTTCAGACTGTCCCAGTCCCAGCGGCCGCTGTTCGGGCGGGGGTTC----TTCCACATGT 22697 Query 110877 CAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATA-GGAACCTTGG 110935 | ||||| || | ||| ||| |||||| |||| ||||| || || || ||| Sbjct 22696 CGAACTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCT 22637 Query 110936 GCTTCAGCCAATTCACAGCT-CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACG 110994 |||| |||| || || | |||||||| | ||| || ||||| || || || Sbjct 22636 CCTTC-GCCATCTC-CATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTC 22579 Query 110995 AGCATTCATCTCCTTGGCTTCATC--TGAATCAAATGCGTAGCGGCA-CAAAATAAATAC 111051 ||| |||| | || || || | ||| | || | | || ||| ||| || || | Sbjct 22578 AGCGTTCACCCTCTGCGCCTCTGCACTGA--CGAAGG-GCAGGCGCAGCAAGATGAAGGC 22522 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 |||||| || || || || ||||| || | ||| | || ||||| || ||||| Sbjct 22521 ATCCGCCAGGCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCGGCGCGC 22462 Query 111112 AGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 111171 ||||| || || || | || | ||| ||||| ||||| || || || | ||| Sbjct 22461 CGTCTCCACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTT 22402 Query 111172 TGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGG 111231 |||| | || | | ||| | ||| |||| || || || | || Sbjct 22401 CGTGACGCTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGG 22342 Query 111232 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 111291 || ||||| || || | ||||| || || ||||| || |||||||| | ||| Sbjct 22341 CAGCGCGATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAAT 22282 Query 111292 TTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTT 111351 || || || | ||| || | || ||||| || | ||||| ||||| ||| |||| Sbjct 22281 CTCGGTGCACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTT 22222 Query 111352 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 |||||||||||||||||| ||| | ||| |||||||| |||| || | || || || Sbjct 22221 GCACGCATCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGC 22162 Query 111412 CTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 ||| || | | ||| |||| | || | | || || ||| |||||| Sbjct 22161 GAACCACACCTCCTGCGCCTGGATCGTCTGC-ACGCCGCGGCCTTCCTTCTCGTAGCGCT 22103 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT-TGTCTGGA 111529 ||| ||| |||||||||||| || |||| || || || || | || ||| Sbjct 22102 CGTACAGGCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCGGA 22044 Query 111530 CAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | || | ||| ||| || | || || || ||||||||||| |||||||| ||||| Sbjct 22043 TCCATCAGCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCA 21985 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 ||| | ||||||| || | || || || | || |||| | | | Sbjct 21984 CAGCGCGTAAAAGAGGTCACGGGCGCGCTGGTCGTCCTTGCCAGTGTTGCGCTTCAGCAG 21925 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 | ||| | | ||| || |||||||| |||||||| || || |||| | ||||| || Sbjct 21924 CAAGAAGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCG 21865 Query 111709 ---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 || || | || | || ||||| || ||| ||| || ||||| ||||| || | Sbjct 21864 CTTACCGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCAC 21805 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCAT 111824 | |||| || || || || || || || | || | | | | Sbjct 21804 CAGCCCATTCGACGTGCCGTTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCGGATGTTGT 21746 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | | ||||| ||||| || || ||| ||| ||| || |||||| | || || Sbjct 21745 GCACGTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTAT 21686 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | || || |||| ||| ||| ||||| ||||| | |||||| | |||||||| Sbjct 21685 CGTAAATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCTCATCTGCG 21626 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACA 112004 | | || || || || ||||||||||| || || ||||| |||| | || | |||| Sbjct 21625 GCTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACA 21566 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 || |||||| ||||| || | | ||| || | |||||||||| || || | Sbjct 21565 TCAAGTCGTAGGTCTCGCGTACGCTTTTCAGGTCGTCGACATGGATGCCGAGGGCAACGC 21506 Query 112065 GCATGAA 112071 ||| ||| Sbjct 21505 GCAGGAA 21499 >seq5671 Length=8019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 7665 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 7606 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 7605 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 7546 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 7545 CCCTCCAC 7538 >seq4524 Length=6481 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 5883 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 5942 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 5943 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 6002 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 6003 CCCTCCAC 6010 >seq3161 Length=4752 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 599 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 540 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 539 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 480 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 479 CCCTCCAC 472 >seq3160 Length=11589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| ||| ||| || ||||| || || || || || || || ||| || || Sbjct 355 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCA 414 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | | ||||||||| ||||| ||||||||||| Sbjct 415 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATG 474 Query 122779 CCCTCCAC 122786 |||||||| Sbjct 475 CCCTCCAC 482 >seq2698 Length=10164 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 145281 AGCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAAT 145340 ||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| Sbjct 356 AGCTCCCATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAAT 415 Query 145341 CCAGGTAGGAGC 145352 || ||| ||||| Sbjct 416 CCTGGTGGGAGC 427 >seq4297 Length=10155 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 597 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 538 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 537 CAGGTAGGAG 528 >seq2002 Length=10488 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 2070 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 2011 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 2010 CAGGTAGGAG 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984669938400