Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5482 176 6e-39 seq5671 122 1e-22 seq4524 122 1e-22 seq3161 122 1e-22 seq3160 122 1e-22 >seq5482 Length=23815 Score = 176 bits (194), Expect = 6e-39 Identities = 852/1335 (64%), Gaps = 35/1335 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||| | ||||| |||||||| || || || | ||| || | || || Sbjct 22871 TAGATGTTCGAGGTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGAC 22812 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| | ||| ||| || | || | | | | ||| Sbjct 22811 GCGGTGGGCATCGGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCC 22752 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTGCCACATATCAAA 118354 || ||| ||||||||| || | ||| | || | || |||||| || || Sbjct 22751 TTCAGACTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTCGAA 22693 Query 118355 CTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTC 118414 ||| ||||| || ||| || || |||| || ||||| || |||||||| ||| Sbjct 22692 CTGCAGGATCCCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTT 22633 Query 118415 CGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATT 118474 ||||| || |||||| | || ||| || || || || ||||| ||| || Sbjct 22632 CGCCATCTCCATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTT 22573 Query 118475 CATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAG 118534 || || ||||| | | || | || || ||| || || ||||||| || Sbjct 22572 CACCCTCTGCGCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAG 22513 Query 118535 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG--GTCTCC 118592 || || || || | ||| | ||||| | | ||| || || | | ||| |||||| Sbjct 22512 GCCCTGCACGCCCAAGCCGACAGGGCGGTTGCGCATGTTG--CTGCGGCGCGCCGTCTCC 22455 Query 118593 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 118652 || || || | || | ||||| || | || || || |||| ||| |||| Sbjct 22454 ACCGGGTAGTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACG 22395 Query 118653 TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 | ||| | || ||| | ||| |||| || || || | ||| || ||| Sbjct 22394 CTGTAGAGCAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCG 22335 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 || || || || || ||||| | |||||| || |||||||| | ||| || ||| Sbjct 22334 ATCGAGGCGAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTG 22275 Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832 |||| ||| || | || || ||||| | |||||| || || ||||| |||| |||||| Sbjct 22274 CACAGGTTCGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCA 22215 Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892 |||||||| || ||| | ||| |||||||| | || |||| || || || ||| Sbjct 22214 TCCTTGTAGAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCAC 22155 Query 118893 ACAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951 || | | || |||| | || | | || || || | |||||| ||| || Sbjct 22154 ACCTCCTGCGCCTGG-ATCGTCTGCACGCCGCGGCCTTCCTTCTCGTAGCGCTCGTACAG 22096 Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT-GGGCAGAAGA 119010 | ||||||||| || || | || ||||| || || | || || | | Sbjct 22095 GCGTTCAAACTCCTCGCCGTAGCAGTCGCTCAGCCCCGG-GCATGTGCTCGGATCCATCA 22037 Query 119011 GAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 | | ||| ||| || | ||| || || ||||||||||| |||||||||||||| ||||| Sbjct 22036 GCGTCCACTTGCCCTCGCTCTTC-ACACGCTTCATGAACAGGTCTGGGATCCACAGCGCG 21978 Query 119070 GAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127 | ||||| || || ||| ||| || || | || ||| | || | ||| | Sbjct 21977 TAAAAGAGGTCACG--GGCGCGCTGGTCGTCCTTGCCAGTGTTGCGCTTCAGCAGCAAGA 21920 Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---AC 119184 || | | ||| || ||||||||||| || |||||||| |||| | ||||| || || Sbjct 21919 AGCCGAAGATGTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTAC 21860 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 || |||||| || || | |||||| ||| || || || ||||| || | | | Sbjct 21859 CGCCGCCCTGGTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCC 21800 Query 119245 CATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 ||| || ||| || || || ||| || | | || | || | ||| | Sbjct 21799 CATTCGACGTGCCGTTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGGATGTTGTGCAC 21742 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 ||||| ||||| || || ||| ||| ||| ||||||||| | || | |||| Sbjct 21741 GTGCAGGCCAATGCCGCCGGCCGCCTTGCTGATGACTGCGCACTCCTTCAGCGTATCGTA 21682 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATTTGAGG 119419 || || ||||| ||| |||| |||| | ||||| |||| ||| || || Sbjct 21681 AATGCCGTCGATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGG 21625 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 119479 | | || || || ||||||||||| || || || ||||| |||| | || | ||||| Sbjct 21624 CTTCGGCGTGCCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACAT 21565 Query 119480 CTTGTCGTAGGTCTC 119494 | |||||||||||| Sbjct 21564 CAAGTCGTAGGTCTC 21550 >seq5671 Length=8019 Score = 122 bits (134), Expect = 1e-22 Identities = 353/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 7957 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 7898 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 7897 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 7840 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 7839 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 7781 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 7780 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 7721 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 7720 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 7664 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 7663 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 7604 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 7603 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 7544 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || ||| ||| Sbjct 7543 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATCCA 7487 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 7486 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 7436 >seq4524 Length=6481 Score = 122 bits (134), Expect = 1e-22 Identities = 353/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 5591 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 5650 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 5651 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 5708 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 5709 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 5767 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 5768 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 5827 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 5828 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 5884 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 5885 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 5944 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 5945 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 6004 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || ||| ||| Sbjct 6005 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATCCA 6061 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 6062 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 6112 >seq3161 Length=4752 Score = 122 bits (134), Expect = 1e-22 Identities = 353/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 891 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 832 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 831 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 774 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 773 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 715 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 714 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 655 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 654 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 598 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 597 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 538 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 537 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 478 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || ||| ||| Sbjct 477 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATCCA 421 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 420 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 370 >seq3160 Length=11589 Score = 122 bits (134), Expect = 1e-22 Identities = 353/531 (66%), Gaps = 18/531 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || ||| ||||||||||||||| ||||| || | || ||| ||||||| Sbjct 63 ATACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 122 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGG--CACTCCAATCTGTTTGAGGAGA 129844 || || || || | | | ||| | |||| || || | | | || || Sbjct 123 GAAGTCGAACGGCTGCGTCACGTTGTAG--TGCTTCTCCAGCCCCAGCGATACAAGCAGC 180 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 || |||| ||| |||| ||||||| | |||| || | |||||| ||||| || | Sbjct 181 CGGTCCGCCACGAACTCGATGTACTGCGCCATCAGGTCCGCGTTCATGCCGATCAG-TCG 239 Query 129905 CATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || |||||||| |||||||| | ||| |||| ||| || || | ||| | Sbjct 240 CACCGGCAGCGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCTACGATGATCTC 299 Query 129964 GTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-CACGGC 130017 | | | ||| || | ||| || ||| | || ||| | || |||| | Sbjct 300 CAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGTGTTGTACAGCAGGCACG-C 356 Query 130018 AAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 130077 ||| ||| ||| || |||||||| || ||||| || || || ||| ||| || || Sbjct 357 AAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAGCCCAGG 416 Query 130078 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 130137 ||| || || |||||||||| |||||| | || || || || || ||||||||||| || Sbjct 417 CATCAGCCCGCGCTTCTTCAGCCAGAACAGAGCGCAGAACGACCCCGAGAAGAAGATGCC 476 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCA 130197 |||||| |||||| | | || ||||| || | || | || ||| ||| Sbjct 477 CTCCACCGCCGCGAAGCCGATCAGCCGCTCCTGGAA-GCTCGCTCCGCTG--CCAATCCA 533 Query 130198 CTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | || |||||||| ||||| |||| ||| ||||||| ||||||||||| Sbjct 534 CCGCACCGCCCACTCTGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388593177240