Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5671 109 6e-19 seq4524 109 6e-19 seq3161 109 6e-19 seq3160 109 6e-19 >seq5671 Length=8019 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 7391 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 7450 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| ||| || | ||| | Sbjct 7451 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGG--CAGCGGAGCGAGC- 7507 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 7508 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 7567 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 7568 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 7627 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 7628 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 7666 >seq4524 Length=6481 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 6157 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 6098 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| ||| || | ||| | Sbjct 6097 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGG--CAGCGGAGCGAGC- 6041 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 6040 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 5981 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 5980 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 5921 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 5920 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 5882 >seq3161 Length=4752 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 325 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 384 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| ||| || | ||| | Sbjct 385 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGG--CAGCGGAGCGAGC- 441 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 442 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 501 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 502 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 561 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 562 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 600 >seq3160 Length=11589 Score = 109 bits (120), Expect = 6e-19 Identities = 193/279 (69%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | | |||||| || ||| | | || ||||| || | Sbjct 629 GACACGTACATCACGGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 570 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| || || ||||| || |||| ||| || | ||| | Sbjct 569 CCGTGCATCCAGAAGAAGGCAGAGTGGGCGGTGCGGTGGATTGG--CAGCGGAGCGAGC- 513 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || ||||| || ||| || ||| || ||||| ||||||||||| || || ||| Sbjct 512 TTCCAGGAGCGGCTGATCGGCTTCGCGGCGGTGGAGGGCATCTTCTTCTCGGGGTCGTTC 453 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 |||||| | | ||||| |||||||| || || ||||| || || ||| ||||||| Sbjct 452 TGCGCTCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCTGGGCTGACGTTCAGCAACGAG 393 Query 94918 CTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || ||||| || |||||||| || ||| || |||||| Sbjct 392 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTTGCG 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216844007960