Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5482 286 4e-72 seq6023 120 3e-22 >seq5482 Length=23815 Score = 286 bits (316), Expect = 4e-72 Identities = 549/788 (70%), Gaps = 26/788 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 || ||| | |||||| ||||||| ||| | || ||||| | |||||| | | || Sbjct 21487 CCGCAGCAGCTTTTCCTGCGCGTTGCCCTCGGCATCCATGTCGACGACCTGAAAAGCGTA 21546 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAG-TACTTTACGCACGCCACGCCAACCCTGTT 53298 || ||||| |||||||| ||| | || | | ||| ||||||||||| || ||||| || Sbjct 21547 CGCGAGACCTACGACTTGATGT-CGAAGGGCTTCTTCACGCACGCCACCCCGACCCTCTT 21605 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGA 53355 |||||| || ||| | || |||||| |||| ||||| |||| || |||||| Sbjct 21606 CAACGCCGGCACGCCGAAGCCGCAGATG---AGCTCGTGCTTCTTGGTCGCCTCGAAGGA 21662 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 ||| ||||||||||| ||||| ||||| |||||||| || |||| |||| | | Sbjct 21663 CGACAGCATCGACGGCATTTACGATACGCTGAAGGAGTGCGCAGTCATCAGCAAGGCGGC 21722 Query 53416 GGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGA 53474 || || || || | ||| ||| | ||| |||| | ||||| ||| || | Sbjct 21723 CGGCGGCATTGGCCTGCACGTGCAC-AACATCCGCTCCGCCGGCAGCTACATCGCCGGCA 21781 Query 53475 CGAACGGCGTCGCCGA-TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGG 53533 |||||||| || ||| ||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 21782 CGAACGGCA-CGTCGAATGGGCTGGTGCCGATGCTACGCGTCTTCAACAACACTGCCCGC 21840 Query 53534 TACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGG 53593 ||||| ||||||| || || ||||||||||| | |||||| | ||||| ||||||||| Sbjct 21841 TACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTGTACCTTGAGCCGTGG 21900 Query 53594 CACGCCGACATTATGGAGTTTCTCG-AGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652 ||||||||||| | | | |||| | |||| | || || | || || ||| Sbjct 21901 CACGCCGACATCTTCG-GCTTCTTGCTGCTGAAGCGCAACACTGGCAAGGACGACCAGCG 21959 Query 53653 CTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAA 53712 | ||||||||| ||| || |||||||| || ||||| |||||| ||| | ||| Sbjct 21960 CGCCCGTGACCTCTTTTACGCGCTGTGGATCCCAGACCTGTTCATG---AAGCGTGTGAA 22016 Query 53713 GGACGAGG---AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CT 53768 | ||||| ||||| |||||| |||| | ||||| || || || | | || Sbjct 22017 GAGCGAGGGCAAGTGGACGCTGATGGATCCGAGCACATGCCCGGGGCT-GAGCGACTGCT 22075 Query 53769 ACGGTGAGGAGTTT-AACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAA 53826 |||| ||||||||| |||| |||| || || |||| | |||||| | | | Sbjct 22076 ACGGCGAGGAGTTTGAACG-CCTGTA-CGAGCGCTACGAGAAGGAAGGCCGCGGCGTGCA 22133 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || | || |||||| ||||| ||| || ||||| || ||| | |||||||| Sbjct 22134 GACGATCCAGGCGCAGGAGGTGTGGTTCGCGATCCTTGAGTCGCAGATCGAGACGGGCGT 22193 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGT 53946 ||| | ||| |||||||||| || |||| ||| |||||||||||| | ||| Sbjct 22194 GCCTTTCATCCTCTACAAGGATGCGTGCAACAGCAAGTCGAACCAGAAGAACCTTGGCAC 22253 Query 53947 CATCAAAT 53954 ||||||| Sbjct 22254 GATCAAAT 22261 Score = 150 bits (166), Expect = 2e-31 Identities = 311/453 (69%), Gaps = 11/453 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | ||||||||||| | ||||||| ||||| |||||||||||| | |||||| | Sbjct 22771 GGCATGCGCAACTCCCTCTTGCTGGCGCCGATGCCCACCGCGTCGACGTCGCAGATCCTC 22830 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||||| |||||| |||||||| | ||| | ||||||||| | ||||| | | Sbjct 22831 GGCAATAACGAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTACGCCGTGTCTTGAGT 22890 Query 55598 GGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGAT-CAACAAGTG 55656 || ||||| || | |||||| ||||||| | |||||| || || | | ||| Sbjct 22891 GGCGAGTTCCCGGTGGTGAACAAGTACCTCGTGATGGACCT-CATCCGACGCGGCCTGTG 22949 Query 55657 GAACCCGCAGAT-CAAGACG-GATATTGTGCGG-AACGGGGGGTCCGTCCAGAATCTGGA 55713 |||| | ||| | ||| ||| | | ||||| ||| ||| || | || Sbjct 22950 GAACGAGACGATGCGCAACGAGATCATCTCATTCAACGGC---TCCATCCTGACAATTGA 23006 Query 55714 --GATTCCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 | ||| | || | |||||||| | ||||| || |||||||||||||||||| | Sbjct 23007 CGGCATCCCCGACGACCTCAAGGAGCTCTACCGCACCGTGTGGGAGATTCCACAGCGCAA 23066 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 ||||| |||||| || || || ||||||||||||||| ||||| ||||| | Sbjct 23067 GCTGATCGACATGGCCCGCGACCGCGGCCAGTACATCGACCAGTCGCAGTCGTTGAACCT 23126 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 ||| || ||| || | || | || | | ||||||| ||| ||| |||| || Sbjct 23127 GTTCCTGCAGAGCCCGACCTCGGGCCAGATCACGTCGATGCTCTTCTACACGTGGGAGTG 23186 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || ||||||||||| ||||||| ||||| || Sbjct 23187 CGGCCTCAAGACGGGCGTGTACTACCTGCGCAC 23219 >seq6023 Length=7033 Score = 120 bits (132), Expect = 3e-22 Identities = 243/350 (69%), Gaps = 12/350 (3%) Strand=Plus/Minus Query 151882 CCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAACTCCGGC 151941 || |||||| | ||||||||| ||| | |||||||||||| || |||| | |||| Sbjct 5311 CCAATGCCCACCGCACCGTTGCACAGCAGCATCGGCACAATGGGCACGTAGTGATTCGGC 5252 Query 151942 TCCACCTGT-TGAC--CGTCATCCATCACGTATTTCAA-AACGGAATTGTCAGCCGGATC 151997 |||||| | || | | |||||||| || | || ||||| | ||| || | Sbjct 5251 TCCACCGGCGTGCCTTCCTCATCCATA---TAGTCCAGCAACGGG-TCGTCCTCCTCAGG 5196 Query 151998 GAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGG-AGCTGGCCGCAT 152056 || || | || || | |||| | ||| |||||||| |||| ||| ||| | Sbjct 5195 AAAGATGAGCCGGGTGAAGCGACTGAGCTTCGTAAAGATGTAGCGGGGAGC-GGCGTGGT 5137 Query 152057 CCTTGCC-ACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 | ||||| | |||| |||||| || ||||| || ||| |||| ||||||| |||| Sbjct 5136 CGTTGCCGAGCTGCT-GCCGCGAGCCGAACTGGCCCTCCGGCACGAGCAGGTTGATGTTG 5078 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| ||||| ||| ||||| |||| ||||||||||| ||||||| || || ||| Sbjct 5077 TTGCCGCCCGTGAAGTTCTGCGCCATCTTCACAATCGTCTCCTGCAGCGACGTCTCGCCG 5018 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 ||||| | |||| | ||| | |||||| || | | ||| |||||||| Sbjct 5017 TGGTGGAAGGCCGACACCTCGGAGATGTAGCCGGAGAGCTGGGCCACCTT 4968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174760434200