Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5482 192 7e-44 seq5671 104 3e-17 seq4524 104 3e-17 seq3161 104 3e-17 seq3160 104 3e-17 seq4237 89.7 6e-13 >seq5482 Length=23815 Score = 192 bits (212), Expect = 7e-44 Identities = 846/1325 (64%), Gaps = 48/1325 (4%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||| | ||||| || |||||| || ||||||||||| | ||| ||| || |||||| Sbjct 22859 GTGAAGGGCTCGAAGCACTCGTTATTGCCGAGGATCTGCGACGTCGACGCGGTGGGCATC 22800 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 || | | ||| || || || |||| |||| || | | | | ||| || | ||| | Sbjct 22799 GGCGCCAGCAAGAGGGAGTTGCGCATGCCGACCTGCATCACCTTCTCCTTCAGA-CTGTC 22741 Query 80515 CAAAAATCAACCCCAACGCTGT----------GACC--CCACATGTCGTGCTGCAAGATG 80562 | | || | | |||||| | | |||||||||| ||||| ||| Sbjct 22740 CCAGTCCCAGCGGC--CGCTGTTCGGGCGGGGGTTCTTCCACATGTCGAACTGCAGGATC 22683 Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622 |||| || ||| ||| ||| |||||||||||||||||| ||| |||| ||| Sbjct 22682 CCCTGGCTGGCGGGACTGCCCTTGAAGGTCTCGTACGGGCCCTCCTCCTTCGCCATCTCC 22623 Query 80623 CACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGC 80682 |||| || | || ||| || ||| ||| || | | |||||| | || Sbjct 22622 ATCGACGCCTCCACCGCGGCGAAGTAGATGGTCTCGAAAATCTCAGCGTTCACCCTCTGC 22563 Query 80683 GCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACG 80742 |||| || | |||| | || || || || ||||| | || ||||||||||| ||| Sbjct 22562 GCCTCTGCACTGACGAAGGGCAGGCGCAGCAAGATGAAGGCATCCGCCAGGCCCTGCACG 22503 Query 80743 CCGATGGCGATCGGGCGGTGGCGCTTGTT----CGATCGCTCGGCCTCCGGAATTGGGTA 80798 || | | ||| ||||||| |||| |||| || ||| | | |||| | ||||| Sbjct 22502 CCCAAGCCGACAGGGCGGTTGCGCATGTTGCTGCG-GCGCGCCGTCTCC---ACCGGGTA 22447 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAAC---ATCATG 80855 |||| |||||||||||||||||||||||||| | | || || | | Sbjct 22446 GTAGTTGCGGTCGATGACGCGGTTCAGGTTGCGTGTGATCTGCTTCGTGACGCTGTAGAG 22387 Query 80856 AAGTTTCTGA---AAGTCGAATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGC 80912 || | ||| | ||| | | | | ||||| || || || | || || Sbjct 22386 CAGCTGGTGATCCATCTCGCGCTTCTCCTCGTTCACGAAGCGAGGCAGCGCGATCGAGGC 22327 Query 80913 CAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATT 80972 || ||||||||||| ||| || | || |||| || || || ||||||| || Sbjct 22326 GAGGTTGCACACGGCGGTCTCCTCGGGCGAGGTGTACTCCACAATCTCGGTGCACAGGTT 22267 Query 80973 AGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTA 81032 || | || || || || ||||| |||||||| |||||| |||||| || |||||||| Sbjct 22266 CGAGCATTTGATCGTGCCAAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCATCCTTGTA 22207 Query 81033 GCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCG 81092 | ||| | || || ||||||| ||| |||| ||||| ||| ||| | ||| | Sbjct 22206 GAGGATGAAAGGCACGCCCGTCTCGATCTGCGACTCAAGGATCGCGAACCACACCTCCTG 22147 Query 81093 CGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT--AAGCTTCGTCG 81150 ||||| || | || | |||||| | | || ||| | || | || Sbjct 22146 CGCCTGGATCGTCTGCACGCCGCGGCCTTCCTTCTCGTAGCGCTCGTACAGGCGT--TCA 22089 Query 81151 AACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA 81209 |||| | |||| | || || | || | ||||| | | || |||||| ||| Sbjct 22088 AACTCCTCGCCGTAGCAG-TCGCTCAGCCCCGGGCATGTGCTCGGATCCATCAGCGTCCA 22030 Query 81210 GTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAG 81269 | | ||| ||| ||| ||||||||| ||| |||||||| || ||| || || Sbjct 22029 CTTGCCCTCGCTCTTCACACGCTTCATGAACAGGTCTGGGATCCACAGCGCGTAAAAGAG 21970 Query 81270 GTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGAT 81329 ||| ||| |||| || || | || |||| | || | | ||| | | ||| Sbjct 21969 GTCACGGGCGCGCTGGTCGTCCTTGCCAGTGTTGCGCTTCAGCAGCAAGAAGCCGAAGAT 21910 Query 81330 GTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTG 81386 ||| || ||||| ||||| || |||||||||| | |||||||| || ||| ||||| Sbjct 21909 GTCGGCGTGCCACGGCTCAAGGTACACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTG 21850 Query 81387 GTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTG 81446 || ||||| |||||||| ||| || || || | ||| || | | |||| ||| Sbjct 21849 GTCCACGTAGCGGGCAGTGTTGTTGAAGACGCGTAGCATCGGCACCAGCCCATTCGACGT 21790 Query 81447 ACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGAT 81506 |||||||| || |||| || || ||| | ||| | || || || Sbjct 21789 GCCGTTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGGATGTTGTGCACGTGCAGGCCAAT 21730 Query 81507 GCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCG 81564 ||| || | | ||| ||| ||| |||| || |||| || || ||||| || ||| Sbjct 21729 GCCGCCGGCCGCCTTGCTGATGACTGCGCACTCC--TTCAGCGTATCGTAAATGCCGTCG 21672 Query 81565 ATGCTATCTTTTTTCATGTCAAGCAAGAAAC---AGCTTGACATCTGAGGGCTTTTTGAG 81621 ||||| || | ||| | | | |||||| | |||| |||||| || | | | Sbjct 21671 ATGCTGTCGTCCTTCGAGGCGACCAAGAAGCACGAGCT---CATCTGCGGCTTCGGCGTG 21615 Query 81622 CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAG 81681 ||||| ||||| || || ||||| ||||| |||| | | || ||||||| ||| ||| Sbjct 21614 CCGGCGTTGAAGAGGGTCGGGGTGGCGTGCGTGAAGAAGCCCTTCGACATCAAGTCGTAG 21555 Query 81682 GTTTC 81686 || || Sbjct 21554 GTCTC 21550 >seq5671 Length=8019 Score = 104 bits (114), Expect = 3e-17 Identities = 282/426 (66%), Gaps = 17/426 (4%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| || | |||||||| || ||||| || Sbjct 7538 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGG 7597 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 7598 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 7657 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| || | ||| ||||| |||| | | | | | Sbjct 7658 GACTTTGCG--TGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 7715 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || | || || || ||||| |||| |||||| Sbjct 7716 TGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCT 7773 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||||||| | || || |||| ||||| ||||| || || || Sbjct 7774 GCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGC 7833 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTAT---TAAGCCCTACTGGAATTCTTCAAATCCATT 65087 || || |||||| | | || | |||| |||| || | | || || Sbjct 7834 GGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC---AACGTGACGCAGCCGTT 7890 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || Sbjct 7891 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGG 7950 Query 65148 TGATTA 65153 || || Sbjct 7951 CGAGTA 7956 >seq4524 Length=6481 Score = 104 bits (114), Expect = 3e-17 Identities = 282/426 (66%), Gaps = 17/426 (4%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| || | |||||||| || ||||| || Sbjct 6010 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGG 5951 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 5950 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 5891 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| || | ||| ||||| |||| | | | | | Sbjct 5890 GACTTTGCG--TGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 5833 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || | || || || ||||| |||| |||||| Sbjct 5832 TGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCT 5775 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||||||| | || || |||| ||||| ||||| || || || Sbjct 5774 GCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGC 5715 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTAT---TAAGCCCTACTGGAATTCTTCAAATCCATT 65087 || || |||||| | | || | |||| |||| || | | || || Sbjct 5714 GGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC---AACGTGACGCAGCCGTT 5658 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || Sbjct 5657 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGG 5598 Query 65148 TGATTA 65153 || || Sbjct 5597 CGAGTA 5592 >seq3161 Length=4752 Score = 104 bits (114), Expect = 3e-17 Identities = 282/426 (66%), Gaps = 17/426 (4%) Strand=Plus/Plus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| || | |||||||| || ||||| || Sbjct 472 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGG 531 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 532 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 591 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| || | ||| ||||| |||| | | | | | Sbjct 592 GACTTTGCG--TGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 649 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || | || || || ||||| |||| |||||| Sbjct 650 TGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCT 707 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||||||| | || || |||| ||||| ||||| || || || Sbjct 708 GCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGC 767 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTAT---TAAGCCCTACTGGAATTCTTCAAATCCATT 65087 || || |||||| | | || | |||| |||| || | | || || Sbjct 768 GGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC---AACGTGACGCAGCCGTT 824 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || Sbjct 825 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGG 884 Query 65148 TGATTA 65153 || || Sbjct 885 CGAGTA 890 >seq3160 Length=11589 Score = 104 bits (114), Expect = 3e-17 Identities = 282/426 (66%), Gaps = 17/426 (4%) Strand=Plus/Minus Query 64738 GTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGC 64797 ||||| || || ||||| || ||||| ||||| || | |||||||| || ||||| || Sbjct 482 GTGGAGGGCATCTTCTTCTCGGGGTCGTTCTGCGCTCTGTTCTGGCTGAAGAAGCGCGGG 423 Query 64798 CTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCAA 64857 |||||||| || ||| |||| |||||||||||||| || |||||||| || ||| Sbjct 422 CTGATGCCTGGGCTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACG 363 Query 64858 GAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACCATCACATGGGACTA 64912 || |||||| | || |||| || | ||| ||||| |||| | | | | | Sbjct 362 GACTTTGCG--TGCCTGCTGTACAACACGCACATCAAGCACAAGCTGCCGCGCGAGCGCG 305 Query 64913 TAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGC--CGCGCT 64970 | | || || | | || || | || || || ||||| |||| |||||| Sbjct 304 TGCTGGAGATCATCGTAGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGCT 247 Query 64971 TCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATATCGAATTTGTAGC 65030 ||| || || ||||||||| | || || |||| ||||| ||||| || || || Sbjct 246 GCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCGCAGTACATCGAGTTCGTGGC 187 Query 65031 AGATCGCCTGCTTACTCAGTTTGGTAT---TAAGCCCTACTGGAATTCTTCAAATCCATT 65087 || || |||||| | | || | |||| |||| || | | || || Sbjct 186 GGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC---AACGTGACGCAGCCGTT 130 Query 65088 TGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAAAGAGGGTAGG 65147 |||| ||||||| |||| ||| |||| ||||| ||||| || || |||| ||| || Sbjct 129 CGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGG 70 Query 65148 TGATTA 65153 || || Sbjct 69 CGAGTA 64 >seq4237 Length=17837 Score = 89.7 bits (98), Expect = 6e-13 Identities = 287/436 (66%), Gaps = 22/436 (5%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GTC 32042 |||||||||||||| ||||||||| | | | |||||| ||||| ||||| ||| Sbjct 8721 GACGGCCTCAAGCCCGGCCAGCGCAAGATCCTCTTTGCCTGCTTCAAGCGCAACCTCGTC 8780 Query 32043 GAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCA 32102 | | ||| ||||||| |||||| | |||||||| || || || | ||||| ||||| Sbjct 8781 -AACGCCATCAAGGTGGTGCAGCTAGCCGGCTACGTCGCGGAACACTCCGCCTACCACCA 8839 Query 32103 CGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAA 32162 |||||| ||||||| | || || || | | || ||| |||| ||||| | || Sbjct 8840 CGGCGACCAGTCGCTCGTGCAGACGATCGTGGGCATGGCGCAGGACTTCGTCGGCGGCAA 8899 Query 32163 TAACCTGAACTTACTC----GAGC-CATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGC 32217 || || || ||| | || | || ||||| || || || || || ||| Sbjct 8900 CAA--TG---TTCCTCTGTTGCGCAAAGACGGCCAGTTCGGCACACGTCTGCAGGGCGGC 8954 Query 32218 AAGG---ATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTC--GCACCTTCGACGCGCA 32272 |||| | || ||| | || |||||||||||||| ||| ||| | || ||| Sbjct 8955 AAGGACCACGCCGCGGG---ACGGTACATCTTCACCCGACTCATGCAGGT--CACCCGCG 9009 Query 32273 AGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGG 32332 || ||| ||||| | ||||| | | | ||| || ||||| | || Sbjct 9010 CCATCTTCCACCCGGCCGACGACTACATCGTGGAATACCGGGACGACGACGGCCTCTCGG 9069 Query 32333 TCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCA 32392 | |||||| | |||||| ||| ||| | |||||| | |||| ||||| | |||| Sbjct 9070 TGGAGCCGTTTTTCTACGTTCCTGTGATCCCGATGGTGCTGGTAAACGGCACCTCCGGCA 9129 Query 32393 TCGGAACGGGGTTCAG 32408 |||| || || ||||| Sbjct 9130 TCGGTACCGGCTTCAG 9145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267419982480