Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5505 129 5e-25 >seq5505 Length=14715 Score = 129 bits (142), Expect = 5e-25 Identities = 381/574 (66%), Gaps = 20/574 (3%) Strand=Plus/Minus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||||||||| ||||| || || |||| || | ||| |||||| || || || | | Sbjct 14090 GTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCACCCGGTCGCAGACCTGTCGCCTT 14031 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || |||| ||| || || || || ||| |||||||| || || ||||| ||||| Sbjct 14030 CGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATGTTAAACGGCACGCCGAGGCCCAT 13971 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTC-CGTC-----GCTCACGTAAAA 30069 ||| | || | |||||| ||| ||||| |||||| ||| | ||||||| || Sbjct 13970 GTCGCAGGAACGCTGGTACAGCATGCACGACAGCTCTTTCGTTTGTGTGTTCACGTAGAA 13911 Query 30070 CTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30129 ||| | | |||||| || || || ||||| || ||| | |||||||| || Sbjct 13910 CTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGGTTCAACGCGCACGGGTTCCACGC 13851 Query 30130 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGG-CGTTTTGCA 30188 | | || || || | ||| | |||||| ||||| ||||| || ||| | Sbjct 13850 GGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCCCTGAGCGTCTCCACAATCGACTTG-A 13792 Query 30189 GCTGATCCACCCCCATCCCCGA-GTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCCGAA 30246 ||||||||| || || ||| ||||| ||| | || | || ||||| | || ||||| Sbjct 13791 TCTGATCCACGCCT-TCTCCGTCGTAGTTTGCGTCGCA-GCCCCTGTACGCGGCGCCGAA 13734 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG---AA 30303 || | ||||||||| ||||| || || || ||||| | |||| ||| || || Sbjct 13733 GTGACGCCACTGGAAGCCGTAGACGGGGCCGAGGTC---CATTTCCTTGTTTTCCGTCAA 13677 Query 30304 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30363 || | |||| | || | | || ||||| ||||||| || | | |||| || Sbjct 13676 ACCGCGGCTGTCGAGGAACGCGCGTGAGGCGTTGCCGTCCCAAATATGAATGTCCTTGTC 13617 Query 30364 AGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGG 30422 | ||| | | ||| || ||| | | |||||||||||||||||| ||| ||| Sbjct 13616 CGCCAGCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCACAGCAGCTCCTCACAC-ACGC 13558 Query 30423 CCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | ||| ||||| | ||| ||||| || ||||| Sbjct 13557 CACGCCAGAAGACACGCTTCGTCGTCAGCAGGGG 13524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406280544946668