Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5505 122 8e-23 >seq5505 Length=14715 Score = 122 bits (134), Expect = 8e-23 Identities = 370/568 (65%), Gaps = 8/568 (1%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || |||||||||||||| ||||| | |||| |||||| |||||||||||||||||| Sbjct 13524 CCCCTGCTGACGACGAAGCGTGTCTTCTGGCGTGGCGTGTGTGAGGAGCTGCTGTGGTTC 13583 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | |||| |||||| | || ||| || | || | | || ||||||| Sbjct 13584 TTGCGTGGGGAGACGAACGCGCAGCTGCTGGCGGACAAGGACATTCATATTTGGGACGGC 13643 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 ||| || || | || || |||| || || || | |||| ||| | Sbjct 13644 AACGCCTCACGCGCGTTCCTCGACAGCCGCGGTTTGACGGAAAACAAGGAAATGGACCTC 13703 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 ||||| |||||||| ||||||||| | ||||| || || | ||| |||| |||| || Sbjct 13704 GGCCCCGTCTACGGCTTCCAGTGGCGTCACTTCGGCGCCGCGTACAGGGGCTGCGACGCA 13763 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 |||| ||| | || | ||| ||| | ||| | | || || | | | |||| Sbjct 13764 AACTACGACGGAGAAGGCGTGGATCAGATCAAGTCGATTGTGGAGACGCTCAGGGCGAAC 13823 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || | ||| | |||| | | ||||||||||||| | | | |||||| Sbjct 13824 CCAAACGACCGCCGGATGCTCTTCACCGCGTGGAACCCGTGCGCGTTGAACCAGATGGCC 13883 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-----CGCGAATGGG-GAGCTGTCC 34636 || || || |||||| || |||| |||||||| | | || | |||||||| Sbjct 13884 CTGCCGCCCTGCCACCTACTTGGCCAGTTCTACGTGAACACACAAACGAAAGAGCTGTCG 13943 Query 34637 TGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGT 34696 ||| ||| || || || || | |||||||| | || |||||||| |||||||| Sbjct 13944 TGCATGCTGTACCAGCGTTCCTGCGACATGGGCCTCGGCGTGCCGTTTAACATTGCCTCG 14003 Query 34697 TACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGT 34755 || | ||||| ||| ||||||| | | || ||| || || || |||||||| Sbjct 14004 TATTCGCTGCTGACGATTTTGATCGCGAAGG-CGACAGGTCTGCGACCGGGTGAGCTGGT 14062 Query 34756 GCATACGTTGGGGGATGCGCATATCTAC 34783 ||| || | || || || || ||||| Sbjct 14063 GCACACACTCGGTGACGCACACGTCTAC 14090 Score = 122 bits (134), Expect = 8e-23 Identities = 370/568 (65%), Gaps = 8/568 (1%) Strand=Plus/Minus Query 6562 GTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACAT 6620 ||||| || || || || | || ||||||||||| || || || ||| || | | Sbjct 14090 GTAGACGTGTGCGTCACCGAGTGTGTGCACCAGCTCACCCGGTCGCAGACCTGTCG-CCT 14032 Query 6621 GAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCA 6680 ||||||| ||| ||||| | || |||||||| |||||||| || | |||| Sbjct 14031 TCGCGATCAAAATCGTCAGCAGCGAATACGAGGCAATGTTAAACGGCACGCCGAGGCCCA 13972 Query 6681 TGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC-CCCATTCGCG-----ACGTAGA 6734 |||| | || || || || ||| ||| |||||||| | || | | ||||||| Sbjct 13971 TGTCGCAGGAACGCTGGTACAGCATGCACGACAGCTCTTTCGTTTGTGTGTTCACGTAGA 13912 Query 6735 ATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACG 6794 | |||| || |||||| || || || |||||| | | | ||||||||||| Sbjct 13911 ACTGGCCAAGTAGGTGGCAGGGCGGCAGGGCCATCTGGTTCAACGCGCACGGGTTCCACG 13852 Query 6795 CGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCA 6854 || | | |||| | ||| | |||||| | | | || || | | ||| | Sbjct 13851 CGGTGAAGAGCATCCGGCGGTCGTTTGGGTTCGCCCTGAGCGTCTCCACAATCGACTTGA 13792 Query 6855 GCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGT 6914 ||| ||| | || | ||| |||| || |||| |||| ||| | || || |||| Sbjct 13791 TCTGATCCACGCCTTCTCCGTCGTAGTTTGCGTCGCAGCCCCTGTACGCGGCGCCGAAGT 13732 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974 | | ||||||||| |||||||| ||||| | ||| |||| | || || | Sbjct 13731 GACGCCACTGGAAGCCGTAGACGGGGCCGAGGTCCATTTCCTTGTTTTCCGTCAAACCGC 13672 Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034 | |||| || || | || || ||| ||||||| || | | || | || | Sbjct 13671 GGCTGTCGAGGAACGCGCGTGAGGCGTTGCCGTCCCAAATATGAATGTCCTTGTCCGCCA 13612 Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCC 7094 || || | |||||| |||| | || |||||||||||||||||| |||||| || Sbjct 13611 GCAGCTGCGCGTTCGTCTCCCCACGCAAGAACCACAGCAGCTCCTCACACACGCCACGCC 13552 Query 7095 AGTACACACGTTTCGTCGTCAGCAGCGG 7122 || | ||||| |||||||||||||| || Sbjct 13551 AGAAGACACGCTTCGTCGTCAGCAGGGG 13524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448228617824880