Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lotmaria_20passim_20[genbank_20GCA_5F002216625.1_202017-07-11] 6,029 sequences; 27,738,775 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5671 96.9 7e-15 seq4524 96.9 7e-15 seq3161 96.9 7e-15 seq3160 96.9 7e-15 seq6023 89.7 1e-12 >seq5671 Length=8019 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 7754 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 7813 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 7814 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 7873 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 7874 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 7933 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 7934 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 7966 >seq4524 Length=6481 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 5794 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 5735 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 5734 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 5675 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 5674 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 5615 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 5614 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 5582 >seq3161 Length=4752 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 688 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 747 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 748 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 807 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 808 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 867 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 868 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 900 >seq3160 Length=11589 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| |||||||| | || || || ||||||||||| || || || |||| | Sbjct 266 GAGTTCATCTGCGACGCGCTGCCGGTGCGACTGATCGGCATGAACGCGGACCTGATGGCG 207 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | || |||| ||| ||||| || Sbjct 206 CAGTACATCGAGTTCGTGGCGGACCGGCTGCTTGTATCGCTGGGGCTGGAGAAGCACTAC 147 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | || |||| || |||||| | || || || ||||| || || |||||| Sbjct 146 AACGTGACGCAGCCGTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 87 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 ||||| ||| || |||| ||||| |||||| Sbjct 86 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCC 54 >seq6023 Length=7033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 188/279 (67%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 273774 AGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCA 273833 || ||||| || ||||| | || | || ||||| ||||| ||| ||| ||| || Sbjct 5170 AGCTTCGTAAAGATGTAGCGGGGAGCGGCGTGGTCGTTGCCGAGCTGCTGCCGCGAGCCG 5111 Query 273834 AACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATA 273893 ||||| ||||| |||| ||| ||| |||||||||| || | | | ||| ||||| Sbjct 5110 AACTGGCCCTCCGGCACGAGCAGGTTGATGTTGTTGCCGCCCGTGAAGTTCTGCGCCATC 5051 Query 273894 TTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA 273953 ||||| || ||| |||| || || |||||||||||| |||| |||| ||| Sbjct 5050 TTCACAATCGTCTCCTGCAGCGACGTCTCGCCGTGGTGGAAGGCCGACACCTCGGAGATG 4991 Query 273954 TAACCACTGAACTGAGCAACCTT---CACATCGCTCGTCAAGTTTCGCTTGAATGCGGAA 274010 || || || ||| || ||||| | | ||||| | ||| ||||| | | Sbjct 4990 TAGCCGGAGAGCTGGGCCACCTTGGCCGCCTCGCTACT---GTTACGCTTCAGCATCGCC 4934 Query 274011 TACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 ||| | ||| |||||||| ||||| | ||| || ||| Sbjct 4933 CACAGGATCTTGCGCTGCGACGGCTTTAGCCCGTCCACG 4895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046658342994966