Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq264 118 2e-21 seq217 116 8e-21 seq531 111 3e-19 seq171 111 3e-19 seq75 95.1 3e-14 seq122 91.5 3e-13 >seq264 Length=67153 Score = 118 bits (130), Expect = 2e-21 Identities = 71/75 (95%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 7788 GCGTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTC 7729 Query 165766 GAGCCCCACGATGGG 165780 || ||||||| |||| Sbjct 7728 GACCCCCACGGTGGG 7714 >seq217 Length=74636 Score = 116 bits (128), Expect = 8e-21 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 24704 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTCTTAATCTGGTGGTCGTGGGTTCGAC 24645 Query 165769 CCCCACGATGGG 165780 ||||||| |||| Sbjct 24644 CCCCACGGTGGG 24633 >seq531 Length=50098 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 230443 CGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502 || || || || |||||||| || |||||| |||||||| || ||| ||||| || Sbjct 47847 CGACTCATCGGGATGAACGCAGATCTTATGAACCAGTACATTGAGTTCTGCGCCGATCGT 47906 Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562 | | ||||| || || ||||| |||||| || ||||| |||| |||||| Sbjct 47907 CTGATCACCGCACTCGGGTATGAGAAGCGGTACAAAGTCAAAAACCCGTTTGACTTTATG 47966 Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622 || | ||||| || || || ||||| |||||||| || ||||| ||| ||||||||||| Sbjct 47967 GAAATGATTTCTCTCCAGGGAAAGACAAACTTCTTTGAGAAGCGCGTCGGTGACTATCAG 48026 Query 230623 AGGCCTGGTGTGAT 230636 | | | || ||||| Sbjct 48027 AAGGCCGGCGTGAT 48040 >seq171 Length=86538 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 230443 CGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGC 230502 || || || || |||||||| || |||||| |||||||| || ||| ||||| || Sbjct 4861 CGACTCATCGGGATGAACGCAGATCTTATGAACCAGTACATTGAGTTCTGCGCCGATCGT 4920 Query 230503 ATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATG 230562 | | ||||| || || ||||| |||||| || ||||| |||| |||||| Sbjct 4921 CTGATCACCGCACTCGGGTATGAGAAGCGGTACAAAGTCAAAAACCCGTTTGACTTTATG 4980 Query 230563 GAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG 230622 || | ||||| || || || ||||| |||||||| || ||||| ||| ||||||||||| Sbjct 4981 GAAATGATTTCTCTCCAGGGAAAGACAAACTTCTTTGAGAAGCGCGTCGGTGACTATCAG 5040 Query 230623 AGGCCTGGTGTGAT 230636 | | | || ||||| Sbjct 5041 AAGGCCGGCGTGAT 5054 >seq75 Length=125691 Score = 95.1 bits (104), Expect = 3e-14 Identities = 62/67 (93%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||| Sbjct 55677 TTGCCCGTTTAGCTCAGT-GGAAGAGCGCCAGACTTTTAATCTGGTGGCCGTGGGTTCGA 55735 Query 165768 GCCCCAC 165774 |||||| Sbjct 55736 CCCCCAC 55742 >seq122 Length=470851 Score = 91.5 bits (100), Expect = 3e-13 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||| | Sbjct 158128 GCCCGTTTAGCTCAGT-GGAAGAGCGCCAGACTTTTAATCTGGTGGCCGTGGGTTCGACC 158070 Query 165770 CCCAC 165774 ||||| Sbjct 158069 CCCAC 158065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057814607514590