Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq531 127 2e-24 seq171 123 3e-23 >seq531 Length=50098 Score = 127 bits (140), Expect = 2e-24 Identities = 374/569 (66%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| |||||||| || || | || || || | | || || ||||| || ||| Sbjct 47737 AGACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTT 47678 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA--GCAAATGACCCCGAAA 16316 || ||||||||| |||||| ||||| | |||||| || ||| | || | | | ||| Sbjct 47677 AAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAA- 47619 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 ||| || ||||| |||| ||| || ||| | || ||| ||| ||| | || || Sbjct 47618 -GAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAAT 47560 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 || |||||||| | |||||| || || || | | ||| || || || || | Sbjct 47559 TA---ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAG 47503 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATT-ATATACGTATCAATCAGTAAACTG 16495 | || || | | | || || || | || |||||||| || ||||| | Sbjct 47502 CGTTGAAGAGCCTTGCCTTATC-TGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAA 47444 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||||| || ||||| || || || || || || || || ||||| ||||| ||| | || Sbjct 47443 TACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCA 47384 Query 16556 GCTATTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || || || | || || | || ||| |||| || |||||| || || || ||| Sbjct 47383 GCGATCTGAATGTCGTTCATG---AAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCA 47327 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 ||| || ||||| |||| | |||||| ||||| | ||||| |||| | Sbjct 47326 GATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTG 47267 Query 16673 TG---CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 | ||| ||||| | ||||| ||| | || |||||||| |||||||| |||| Sbjct 47266 TCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCC 47207 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATC 16758 |||| | ||| || | ||||||||||| Sbjct 47206 TCTGCTTCTTTGTATTTCTTCCAAATATC 47178 >seq171 Length=86538 Score = 123 bits (136), Expect = 3e-23 Identities = 373/569 (66%), Gaps = 18/569 (3%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| |||||||| || || | || || || | | || || ||||| || ||| Sbjct 4751 AGACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTT 4692 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCA--GCAAATGACCCCGAAA 16316 || ||||||||| |||||| ||||| | |||||| || ||| | || | | | ||| Sbjct 4691 AAACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAA- 4633 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376 ||| || ||||| |||| ||| || ||| | || ||| ||| ||| | || || Sbjct 4632 -GAAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAAT 4574 Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436 || |||||||| | |||| | || || || | | ||| || || || || | Sbjct 4573 TA---ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAG 4517 Query 16437 CCTTAAACAATTTCTCTTTTTCCTGAATATCGATT-ATATACGTATCAATCAGTAAACTG 16495 | || || | | | || || || | || |||||||| || ||||| | Sbjct 4516 CGTTGAAGAGCCTTGCCTTATC-TGCTTGGTTCTTGATATACGTGTCGATCAGGATGGAA 4458 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||||| || ||||| || || || || || || || || ||||| ||||| ||| | || Sbjct 4457 TACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCA 4398 Query 16556 GCTATTTGTACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 || || || | || || | || ||| |||| || |||||| || || || ||| Sbjct 4397 GCGATCTGAATGTCGTTCATG---AAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCA 4341 Query 16613 CTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATA 16672 ||| || ||||| |||| | |||||| ||||| | ||||| |||| | Sbjct 4340 GATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTG 4281 Query 16673 TG---CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCC 16729 | ||| ||||| | ||||| ||| | || |||||||| |||||||| |||| Sbjct 4280 TCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCC 4221 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATC 16758 |||| | ||| || | ||||||||||| Sbjct 4220 TCTGCTTCTTTGTATTTCTTCCAAATATC 4192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409969872760