Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq531 152 6e-32 seq171 152 6e-32 seq243 111 2e-19 seq512 93.3 5e-14 >seq531 Length=50098 Score = 152 bits (168), Expect = 6e-32 Identities = 413/620 (67%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||| || ||||| | ||||| || | ||| | ||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 47617 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCATGT 24311 | ||||| || || || || || | | ||||||||| | | | | |||| || Sbjct 47616 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 47558 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| || ||||| | ||||||| | ||||| || || ||||| ||||| || Sbjct 47557 ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 47498 Query 24372 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||||| | || | | || | |||| | ||| || || |||| | ||||| Sbjct 47497 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 47440 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | ||||| ||||| |||||||| || ||||| || || || || || | | | || | | Sbjct 47439 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 47380 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| | || | || ||| | || | ||| ||| |||||||| ||| |||| Sbjct 47379 TCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTG 47320 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCC 24606 | ||||| |||| || || || || || | ||||| | |||| | | |||| Sbjct 47319 CGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCC 47261 Query 24607 AAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 47260 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 47201 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || || Sbjct 47200 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 47141 Query 24726 TTTTTTGCAAGGATTGGTTC 24745 |||| | ||| ||||| || Sbjct 47140 TTTTCTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 152 bits (168), Expect = 6e-32 Identities = 413/620 (67%), Gaps = 13/620 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||| || ||||| | ||||| || | ||| | ||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 4631 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTCATGT 24311 | ||||| || || || || || | | ||||||||| | | | | |||| || Sbjct 4630 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 4572 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| || ||||| | ||||||| | ||||| || || ||||| ||||| || Sbjct 4571 ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 4512 Query 24372 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||||| | || | | || | |||| | ||| || || |||| | ||||| Sbjct 4511 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 4454 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | ||||| ||||| |||||||| || ||||| || || || || || | | | || | | Sbjct 4453 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 4394 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| | || | || ||| | || | ||| ||| |||||||| ||| |||| Sbjct 4393 TCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTG 4334 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCC 24606 | ||||| |||| || || || || || | ||||| | |||| | | |||| Sbjct 4333 CGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCC 4275 Query 24607 AAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 4274 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 4215 Query 24666 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || || Sbjct 4214 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 4155 Query 24726 TTTTTTGCAAGGATTGGTTC 24745 |||| | ||| ||||| || Sbjct 4154 TTTTCTTGAAGCATTGGCTC 4135 >seq243 Length=69200 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 53707 AATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGT 53766 ||| || || ||||| || ||||| ||||| | || | ||||| | || ||||| Sbjct 22413 AATCGACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGT 22354 Query 53767 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 53826 ||| || || ||||||||||| || || ||||| | ||||| ||||| ||||| || Sbjct 22353 GCACAGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGC 22294 Query 53827 ATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 ||||||||||| ||| | || ||||| ||||| |||||||| || || || Sbjct 22293 GTCCTTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGAT 22243 >seq512 Length=1106 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 ||| || || | ||||| || | || |||||||| |||||||||||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 24724 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 24725 ATTTTTTGCAAGGATTGGTTC 24745 |||| | ||| ||||| || Sbjct 968 GTTTTCTTGAAGCATTGGCTC 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716456886640