Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq237 161 1e-34 >seq237 Length=72600 Score = 161 bits (178), Expect = 1e-34 Identities = 338/495 (68%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 145777 GTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGC 145836 |||||||| | |||||||| |||||||| || || || || ||||| || | ||| Sbjct 66090 GTCAGCAGCGCATAGCTGGCAATGTTGAACGGGACGCCGAGACCCATATCGGCACTCCGC 66149 Query 145837 TGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAG 145896 ||||| ||||| || ||||| |||||| |||||||||||||| |||||| |||||| Sbjct 66150 TGGTAGAGCTGACAACTGAGCTTCCCGCCGGCCACGTAGAACTGCGACAGGACGTGGCAT 66209 Query 145897 GGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG 145956 || ||||| ||||| |||| | | || | |||||||| || | || | | || | Sbjct 66210 GGTGGCAGCGCCATCTCGGGGATGGCCACGGGGTTCCACGCACACAAGAGCATTCGCCGG 66269 Query 145957 -CTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCC 146015 | || ||||| | ||| | | | | | || ||||||||| ||||||| || Sbjct 66270 TCGCT-TGGGTTGTTTCTGAGTGCGTCGACGATTTTCCGGAGCTGGTCGACGCCCTTTCC 66328 Query 146016 CCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTA 146075 |||||| | | ||| ||| || |||||||||| ||| ||||| || || Sbjct 66329 AGTGTAATCATCGTCGCAGTTGGTGTAGCTTGCGCCGAAGTGCCGCCATTGGAAGCCATA 66388 Query 146076 GACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCC---CAGCCCGGCCCGGGCGAGGAAGTC 146132 || || || ||||| || ||| | | | ||||| | ||||| | || Sbjct 66389 CACTGGTCCGAGGTCTCC---CTCACGTCGATCGGTGAGCCCAAGTGAGTCGAGGTATTC 66445 Query 146133 CCGGGACCCGTTGGCGTCCCAGATCTTGACGCCC--CTCGCGGAGAGCTCATTGGAGTCC 146190 | || || || ||||||| || ||| || || || | | | |||| ||| Sbjct 66446 TCTTGAACCATTTCCGTCCCATATGCGAACGTCCTTATCACGCAAA--TGGTTGGCGTCG 66503 Query 146191 GTGGACCCCCTG-ATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTT 146249 || | | ||||| |||||||||| |||||||||| ||| || ||||||||||| | ||| Sbjct 66504 GT-GTCTCCCTGAATGAACCAGAAAAGCTCTTCGACGACGCCTCTCCAGAAGACACGCTT 66562 Query 146250 GGTGGTCAGCAGGGG 146264 ||| ||||||||||| Sbjct 66563 GGTCGTCAGCAGGGG 66577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590071688459720