Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq171 188 7e-43 seq531 185 9e-42 seq2 125 7e-24 >seq171 Length=86538 Score = 188 bits (208), Expect = 7e-43 Identities = 375/550 (68%), Gaps = 14/550 (3%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 |||||| | || ||||| ||||| ||||| || || || || ||||| ||| | || Sbjct 4207 TACAAAGAAGCAGAGGCTTCGTTTTGGACAGTTGAAGAAGTAGACCTTTCCCAAGATGTT 4266 Query 116708 AGCGACTGGGAGC----GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | || ||||| |||| |||||| ||||||| || |||||||||||||| ||||| Sbjct 4267 AAAGAATGGGAAGACAAGCTT-AACGACGACGAGCGTCACTTCATCAAGCACGTTCTGGC 4325 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 |||||||| || || || || ||| |||||||| | | || ||| | || Sbjct 4326 ATTTTTCGCAGCATCTGATGGAATAGTCCTTGAGAATCTTGCGGCACGCTTCATGAACGA 4385 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883 | ||| | || || | || ||||| || || || || ||||| || || || | || Sbjct 4386 CATTCAGATCGCTGAAGTTCGTTGCTTTTATGGTTTCCAAATCGCGATTGAAAATATTCA 4445 Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGAGAAGCTCC 116942 |||||| |||||||| | ||| ||||||||||| | | | | | || ||| Sbjct 4446 CTCGGAGATGTATTCCATCCTGATCGACACGTATATCAAGAACCAAGCA-GATAAGGCAA 4504 Query 116943 GTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGC 117002 | | || ||||| || ||||| || ||||| || | ||||||| ||||||| | Sbjct 4505 GGCTCTTCAACGCTATGGAGACTATTCCGTGTGTTCAGCAGAAGGCTCAGTGGGCAATTA 4564 Query 117003 GCTGGAT--CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 ||||| | ||||| | | |||| ||| | || || | ||||| || || Sbjct 4565 AATGGATTAATTCAGCAGA-----CTCGTTCGCCGAAAGACTTGTCGGGTTCGCAGCTGT 4619 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 ||||| ||||||| || |||||| || || || ||||||||||| || || | Sbjct 4620 GGAGGGAATCTTCTTCAGTGGAAGTTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATT 4679 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 ||||| || | || ||||| ||||||||||| ||| | || ||||| |||| || || Sbjct 4680 AATGCCAGGTTTAACCTTCAGTAACGAGCTCATTTCCCGTGATGAGGGGTTGCACTGTGA 4739 Query 117181 CTTTGCCTGT 117190 ||| || ||| Sbjct 4740 CTTCGCTTGT 4749 >seq531 Length=50098 Score = 185 bits (204), Expect = 9e-42 Identities = 374/550 (68%), Gaps = 14/550 (3%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 |||||| | || ||||| ||||| ||||| || || || || ||||| ||| | || Sbjct 47193 TACAAAGAAGCAGAGGCTTCGTTTTGGACAGTTGAAGAAGTAGACCTTTCCCAAGATGTT 47252 Query 116708 AGCGACTGGGAGC----GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | || ||||| |||| |||||| ||||||| || |||||||||||||| ||||| Sbjct 47253 AAAGAATGGGAAGACAAGCTT-AACGACGACGAGCGTCACTTCATCAAGCACGTTCTGGC 47311 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 |||||||| || || || || ||| |||||||| | | || ||| | || Sbjct 47312 ATTTTTCGCAGCATCTGATGGAATAGTCCTTGAGAATCTTGCGGCACGCTTCATGAACGA 47371 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCA 116883 | ||| | || || | || ||||| || || || || ||||| || || || | || Sbjct 47372 CATTCAGATCGCTGAAGTTCGTTGCTTTTATGGTTTCCAAATCGCGATTGAAAATATTCA 47431 Query 116884 CTCGGAAATGTATTCGACCCTCATCGACACGTACGT-GCGCTCTTCGGAGGAGAAGCTCC 116942 |||||| |||||||| | ||| ||||||||||| | | | | | || ||| Sbjct 47432 CTCGGAGATGTATTCCATCCTGATCGACACGTATATCAAGAACCAAGCA-GATAAGGCAA 47490 Query 116943 GTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGC 117002 | | || ||||| || ||||| || ||||| || | ||||||| | ||||| | Sbjct 47491 GGCTCTTCAACGCTATGGAGACTATTCCGTGTGTTCAGCAGAAGGCTCAATGGGCAATTA 47550 Query 117003 GCTGGAT--CGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGT 117060 ||||| | ||||| | | |||| ||| | || || | ||||| || || Sbjct 47551 AATGGATTAATTCAGCAGA-----CTCGTTCGCCGAAAGACTTGTCGGGTTCGCAGCTGT 47605 Query 117061 CGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCT 117120 ||||| ||||||| || |||||| || || || ||||||||||| || || | Sbjct 47606 GGAGGGAATCTTCTTCAGTGGAAGTTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATT 47665 Query 117121 CATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 ||||| || | || ||||| ||||||||||| ||| | || ||||| |||| || || Sbjct 47666 AATGCCAGGTTTAACCTTCAGTAACGAGCTCATTTCCCGTGATGAGGGGTTGCACTGTGA 47725 Query 117181 CTTTGCCTGT 117190 ||| || ||| Sbjct 47726 CTTCGCTTGT 47735 >seq2 Length=132159 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| || ||||| |||| || ||||| | | Sbjct 77985 ATGCAGATCTTCGTCAAAACTCTGACTGGCAAGACTATCACACTCGAGGTGGAAGCAAAC 78044 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| |||| ||| ||||| || || ||||| | |||||| Sbjct 78045 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 78104 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| || || ||||| || || | |||||| || ||||||||| Sbjct 78105 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 78164 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || ||| || || || || Sbjct 78165 ATTCAGAAAGAAAGCACCCTTCACCTCGT 78193 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || || ||||||||| | || || ||||| | | Sbjct 77757 ATGCAGATCTTCGTCAAAACTTTGACTGGTAAGACCATCACCCTTGAGGTGGAAGCAAAC 77816 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||||| |||| ||| ||||| || || ||||| | |||||| Sbjct 77817 GATACCATTGAAAACATCAAGGCAAAAGTTCAAGACAAGGAAGGAATCCCACCAGACCAG 77876 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||| | ||| || || ||||| || || | |||||| || ||||||||| Sbjct 77877 CAGCGACTCATTTTCGCCGGAAAGCAGCTCGAGGATGGGCGCACGCTGTCAGACTACAAC 77936 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||| || ||| || || || || |||| || | || ||| Sbjct 77937 ATTCAGAAAGAAAGCACCCTTCACCTCGTTCTGCGGCTGCGTGGTGGC 77984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515214736913680