Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 >seq2 Length=132159 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| ||||||||||| || || |||||| |||||||||||| ||||| ||| | Sbjct 78175 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 78116 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||| |||||||| || || || || || ||||||||| || |||| || | | | Sbjct 78115 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAACTTTTGCCTTGATGTTT 78056 Query 118668 TCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | ||| || | ||| || ||||||| || | || ||||| ||||||||||| || Sbjct 78055 TCAATGGTATCGTTTGCT-TCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGAC 77997 Query 118727 AAAAATCTGCATG 118739 || ||||||||| Sbjct 77996 GAAGATCTGCATG 77984 Score = 114 bits (126), Expect = 1e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 118548 TCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAG 118607 ||||| ||||||||||| || || |||||| |||||||||||| ||||| ||| | Sbjct 77947 TCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAA 77888 Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 ||||| |||||||| || || || || || ||||||||| || |||| || | | | Sbjct 77887 ATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAACTTTTGCCTTGATGTTT 77828 Query 118668 TCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 || | ||| || |||| || ||||| | ||| | || || || |||| |||||| || Sbjct 77827 TCAATGGTATCGTTTGCT-TCCACCTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGAC 77769 Query 118727 AAAAATCTGCATGGC 118741 || |||||||| || Sbjct 77768 GAAGATCTGCATAGC 77754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826735895556