Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq122 86.0 7e-12 seq113 86.0 7e-12 >seq2 Length=132159 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||| || || ||||| ||||| || | ||| || ||| | || || |||||||| || Sbjct 78181 GTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCG 78122 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| ||||||||||||||||| | || | | ||||||| | ||| ||||| || Sbjct 78121 GCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTGAACTTTTGCCTT 78063 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | || ||| | | |||||| |||| ||||| || ||||| || || || Sbjct 78062 GATGTTTTCAATGGTATCGTTTGCTTCCACCTCGAGTGTGATAGTCTTGCCAGTCAGAGT 78003 Query 43166 CTTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 78002 TTTGACGAAGATCTGCAT 77985 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 ||||| || || ||||| ||||| || | ||| || ||| | || || |||||||| || Sbjct 77953 GTGCTTTCTTTCTGAATGTTGTAGTCTGACAGCGTGCGCCCATCCTCGAGCTGCTTTCCG 77894 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTT 43105 ||||| ||||||||||||||||| | || | | ||||||| | ||| ||||| || Sbjct 77893 GCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTGAACTTTTGCCTT 77835 Query 43106 GAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165 || | | | || ||| | | |||||| || | |||||||| || || || | || Sbjct 77834 GATGTTTTCAATGGTATCGTTTGCTTCCACCTCAAGGGTGATGGTCTTACCAGTCAAAGT 77775 Query 43166 CTTTACAAAGATTTGCAT 43183 || || ||||| ||||| Sbjct 77774 TTTGACGAAGATCTGCAT 77757 >seq122 Length=470851 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 75114 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTTACCACTATACTA 75055 Query 60131 CCGAG 60135 ||||| Sbjct 75054 CCGAG 75050 >seq113 Length=31731 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 17879 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTTACCACTATACTA 17820 Query 60131 CCGAG 60135 ||||| Sbjct 17819 CCGAG 17815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571812646630040