Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 >seq2 Length=132159 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||||| ||| || ||||| | || ||||||||||| ||||||||||| ||| Sbjct 77983 CCACCACGCAGCCGCAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 77924 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | |||||| || ||||||||||| ||||||||||| || Sbjct 77923 AGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 77864 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG-CTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| | |||||| ||| | | | || | |||| | | ||| || Sbjct 77863 ATTCCTTCCTTGTC-TTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCAC 77805 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 || | |||||||| || || || | |||||| || ||||||||||| || Sbjct 77804 CTCAAGGGTGATGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCATAGC 77754 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||||| || || ||||| | || ||||||||||| ||||||||||| ||| Sbjct 78211 CCTCCTCGCAGCCGAAGAACGAGGTGAAGGGTGCTTTCTTTCTGAATGTTGTAGTCTGAC 78152 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | |||||| || ||||||||||| ||||||||||| || Sbjct 78151 AGCGTGCGCCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGG 78092 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTG-CTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| | |||||| ||| | | | || | |||| | | ||| || Sbjct 78091 ATTCCTTCCTTGTC-TTGAACTTTTGCCTTGATGTTTTCAATGGTATCGTTTGCTTCCAC 78033 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || |||||||| || ||||||||||| Sbjct 78032 CTCGAGTGTGATAGTCTTGCCAGTCAGAGTTTTGACGAAGATCTGCAT 77985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323069271354080