Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq254 104 5e-17 >seq254 Length=68440 Score = 104 bits (114), Expect = 5e-17 Identities = 284/428 (66%), Gaps = 13/428 (3%) Strand=Plus/Minus Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGC 249045 |||||||| || || ||||||| ||| ||||| ||| | ||| ||||| ||| Sbjct 32602 ACACATGCGACCCCCACGCTCTACAATGCCGGCACCCCACGCCCGCAGATGAGCAGTTGC 32543 Query 249046 TTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG 249105 || || || || | |||| || || |||| || ||||| || ||||| || | | | Sbjct 32542 TTCCTGCTGGCGCTCAAAGATGATTCGATCGAAGGTATTTACGATACGCTCAAG-ACATG 32484 Query 249106 -GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGA-GCGA 249163 ||| || || || | || || || || | || |||||| ||| || Sbjct 32483 TGCGCTCATCTCGAAGAACAGTGGTGGCATTGGCTTGCATGTTCACAACATTCGAAGCTC 32424 Query 249164 AGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGAT 249223 || | ||||| || ||||||||||||||| |||| || || ||| | || ||| Sbjct 32423 TGGAAGC-TACATTCGCGGGACAAATGGGGTCAGTAATGGAATAGTCCCCATGCTGCGAG 32365 Query 249224 GCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGT 249277 ||| | ||| ||| | | | || |||| | || |||| ||||| | | Sbjct 32364 TCTTCAACGACACTGCCCGCTACGTCGACCAAGGAGGTGGAAAGCGC--AAAGGCAGCTT 32307 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 | ||||| || | || ||||||||| ||||| |||| || || || |||| |||| Sbjct 32306 T-GCCATCTACCTTGAGCCGTGGCACGCTGATATTATGGATTTTTTGAACCTGAAGAAGA 32248 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 ||| |||||| ||| || | ||| | |||||||||||||| || ||| || ||||| Sbjct 32247 ACACCGGCAAGGAGGAGATTCGGGCGAGAGACCTCTTCTACGGTCTCTGGATCCCCGACC 32188 Query 249398 TGTTCATG 249405 | |||||| Sbjct 32187 TCTTCATG 32180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073756865961024