Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq531 152 6e-32 seq171 152 6e-32 seq243 104 3e-17 seq512 84.2 3e-11 >seq531 Length=50098 Score = 152 bits (168), Expect = 6e-32 Identities = 403/603 (67%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||| || ||||||| ||||| || | ||| | |||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||||| || ||||| || ||||| || || | | ||| ||| ||||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA 33759 |||||| || || || || || | | |||||| || | | | | |||| || | Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTAA 47557 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 |||| || ||||| | ||||||| | ||||| || || || || || || || | Sbjct 47556 TCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGA 47497 Query 33820 AGAGA--TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||| | || | | || | |||| | ||| || ||||||| | |||||| Sbjct 47496 AGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACAT 47439 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||| ||||| |||||||| || || || || || || || || | | | || | || Sbjct 47438 CTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGAT 47379 Query 33938 CTGCACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| | || || || || ||| | || | ||| ||| |||||||||||| |||| Sbjct 47378 CTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTG 47320 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCC 34053 | ||||| |||| || || || || || | ||||| | |||| | | |||| Sbjct 47319 CGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCC 47261 Query 34054 AAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 47260 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 47201 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 | ||| || | ||||| || || |||| | |||||| || | |||| |||| || || Sbjct 47200 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 47141 Query 34173 TTT 34175 ||| Sbjct 47140 TTT 47138 >seq171 Length=86538 Score = 152 bits (168), Expect = 6e-32 Identities = 403/603 (67%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||| || ||||||| ||||| || | ||| | |||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||||| || ||||| || ||||| || || | | ||| ||| ||||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTCATGTA 33759 |||||| || || || || || | | |||||| || | | | | |||| || | Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTAA 4571 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 |||| || ||||| | ||||||| | ||||| || || || || || || || | Sbjct 4570 TCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTGA 4511 Query 33820 AGAGA--TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||| | || | | || | |||| | ||| || ||||||| | |||||| Sbjct 4510 AGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACAT 4453 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||| ||||| |||||||| || || || || || || || || | | | || | || Sbjct 4452 CTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGAT 4393 Query 33938 CTGCACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTG 33996 ||| | || || || || ||| | || | ||| ||| |||||||||||| |||| Sbjct 4392 CTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCTG 4334 Query 33997 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCC 34053 | ||||| |||| || || || || || | ||||| | |||| | | |||| Sbjct 4333 CGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTCC 4275 Query 34054 AAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 34112 || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 4274 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 4215 Query 34113 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 | ||| || | ||||| || || |||| | |||||| || | |||| |||| || || Sbjct 4214 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 4155 Query 34173 TTT 34175 ||| Sbjct 4154 TTT 4152 >seq243 Length=69200 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || || ||||| || ||||| ||||| | || | ||||| | || |||||||| Sbjct 22409 GACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTGCAC 22350 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 || || ||||||||||| || || ||||| | ||||| ||||| ||||| || ||| Sbjct 22349 AGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCGTCC 22290 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 |||||||| ||| | || ||||| ||||| ||||| || || || || Sbjct 22289 TTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGAT 22243 >seq512 Length=1106 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||| || || | ||||| || | || |||||||| |||||||||||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171 | ||| || | ||||| || || |||| | |||||| || | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 34172 ATTT 34175 ||| Sbjct 968 GTTT 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629812144205040