Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq531 120 3e-22 seq171 120 3e-22 >seq531 Length=50098 Score = 120 bits (132), Expect = 3e-22 Identities = 388/591 (66%), Gaps = 21/591 (4%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || || ||||| || || || || || | || || || ||| || ||||| Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||| |||||||| || || | ||| || || ||| || ||| ||||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGT-TGCTAGAT- 11806 ||||||||||||||||| || | || | |||||| | | | || |||| || Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAA---CGAGTCTGCTGAATT 47559 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||||| | ||||| | ||| |||| | || || || || || |||||||| Sbjct 47558 AATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 47499 Query 11866 AAATAAATGCATT---TTTTCTATATTATCTCTT-ACATATGTATCTATTAATAAACTAT 11921 || | || || || ||| | | |||| | ||| || || || | | || Sbjct 47498 GAAGA---GCCTTGCCTTATCTGCTTGGT-TCTTGATATACGTGTCGATCAGGATGGAAT 47443 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||| || || ||||||||||| || || ||||| || ||||| || || || | || | Sbjct 47442 ACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAG 47383 Query 11982 AACACTGTACATCCA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 ||| | || ||| || | | |||| | ||||||| || || |||||| Sbjct 47382 CGATCTGAATGTCGTTCATGAAG-CGTGCCGCAAGATTCTCAAGGACTATTCCATCAGAT 47324 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA--- 12097 | ||| |||||||| || | || || || |||| ||||| | ||||| | Sbjct 47323 GCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTC-GTTAAGCTTGTC 47265 Query 12098 -TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 ||||| || | | ||||| || | |||||||||||||| |||||||| ||| | Sbjct 47264 TTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTC 47205 Query 12157 TGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 || || ||| || | ||||| ||||| |||||| || || || | ||| Sbjct 47204 TGCTTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAAC 47154 >seq171 Length=86538 Score = 120 bits (132), Expect = 3e-22 Identities = 388/591 (66%), Gaps = 21/591 (4%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| || || ||||| || || || || || | || || || ||| || ||||| Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||| |||||||| || || | ||| || || ||| || ||| ||||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGT-TGCTAGAT- 11806 ||||||||||||||||| || | || | |||||| | | | || |||| || Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAA---CGAGTCTGCTGAATT 4573 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||||| | ||||| | ||| |||| | || || || || || |||||||| Sbjct 4572 AATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 4513 Query 11866 AAATAAATGCATT---TTTTCTATATTATCTCTT-ACATATGTATCTATTAATAAACTAT 11921 || | || || || ||| | | |||| | ||| || || || | | || Sbjct 4512 GAAGA---GCCTTGCCTTATCTGCTTGGT-TCTTGATATACGTGTCGATCAGGATGGAAT 4457 Query 11922 ACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||| || || ||||||||||| || || ||||| || ||||| || || || | || | Sbjct 4456 ACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAG 4397 Query 11982 AACACTGTACATCCA-CATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 ||| | || ||| || | | |||| | ||||||| || || |||||| Sbjct 4396 CGATCTGAATGTCGTTCATGAAG-CGTGCCGCAAGATTCTCAAGGACTATTCCATCAGAT 4338 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA--- 12097 | ||| |||||||| || | || || || |||| ||||| | ||||| | Sbjct 4337 GCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTC-GTTAAGCTTGTC 4279 Query 12098 -TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 ||||| || | | ||||| || | |||||||||||||| |||||||| ||| | Sbjct 4278 TTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTC 4219 Query 12157 TGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAAC 12207 || || ||| || | ||||| ||||| |||||| || || || | ||| Sbjct 4218 TGCTTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAAC 4168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520741403920