Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq531 138 1e-27 seq171 138 1e-27 seq243 104 3e-17 seq512 87.8 2e-12 >seq531 Length=50098 Score = 138 bits (152), Expect = 1e-27 Identities = 412/621 (66%), Gaps = 15/621 (2%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| ||||| || ||||| | ||||| || | ||| | ||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 47617 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT 36334 | ||||| || || || || || | | |||||| || | | | | ||| || Sbjct 47616 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 47558 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| || ||||| | ||||||| | ||||| || || ||||| ||||| || Sbjct 47557 ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 47498 Query 36395 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||||| | || | | || | |||| | ||| || || |||| | ||||| Sbjct 47497 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 47440 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 | ||||| ||||| |||||||| || ||||| || || || || || | | | || | | Sbjct 47439 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 47380 Query 36513 TCTGTACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 |||| | || || || || ||| | || | ||| ||| |||||||| ||| ||| Sbjct 47379 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 47321 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTC 36628 || ||||| |||| || || || || || | |||| | |||| | | ||| Sbjct 47320 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTC 47262 Query 36629 CAAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 | || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 47261 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 47202 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTG 36747 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || | Sbjct 47201 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 47142 Query 36748 ATTTTTTGCAAGGATTGGTTC 36768 |||| | ||| ||||| || Sbjct 47141 GTTTTCTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 138 bits (152), Expect = 1e-27 Identities = 412/621 (66%), Gaps = 15/621 (2%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| ||||| || ||||| | ||||| || | ||| | ||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 36275 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 4631 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT 36334 | ||||| || || || || || | | |||||| || | | | | ||| || Sbjct 4630 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 4572 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| || ||||| | ||||||| | ||||| || || ||||| ||||| || Sbjct 4571 ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 4512 Query 36395 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||||| | || | | || | |||| | ||| || || |||| | ||||| Sbjct 4511 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 4454 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 | ||||| ||||| |||||||| || ||||| || || || || || | | | || | | Sbjct 4453 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 4394 Query 36513 TCTGTACTTCTGTACAA-AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCT 36571 |||| | || || || || ||| | || | ||| ||| |||||||| ||| ||| Sbjct 4393 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 4335 Query 36572 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG---TTTATTC 36628 || ||||| |||| || || || || || | |||| | |||| | | ||| Sbjct 4334 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTC 4276 Query 36629 CAAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 | || | || | ||||| || | || |||||||| ||||||||||| || |||||||| Sbjct 4275 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 4216 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTG 36747 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || | Sbjct 4215 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 4156 Query 36748 ATTTTTTGCAAGGATTGGTTC 36768 |||| | ||| ||||| || Sbjct 4155 GTTTTCTTGAAGCATTGGCTC 4135 >seq243 Length=69200 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || || ||||| || ||||| ||||| | || | ||||| | || |||||||| Sbjct 22409 GACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTGCAC 22350 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || || ||||||||||| || || ||||| | ||||| ||||| ||||| || ||| Sbjct 22349 AGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCGTCC 22290 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 |||||||| ||| | || ||||| ||||| ||||| || || || || Sbjct 22289 TTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGAT 22243 >seq512 Length=1106 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 ||| || || | ||||| || | || |||||||| |||||||||||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTG 36747 | ||| || | ||||| || || |||| | |||||||| | |||| |||| || | Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 36748 ATTTTTTGCAAGGATTGGTTC 36768 |||| | ||| ||||| || Sbjct 968 GTTTTCTTGAAGCATTGGCTC 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167098578120