Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq237 131 1e-25 >seq237 Length=72600 Score = 131 bits (144), Expect = 1e-25 Identities = 285/424 (67%), Gaps = 2/424 (0%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 || |||| ||| ||| || |||| || |||||||| || | ||| || || | ||||| Sbjct 65996 CAAGGGACCAATGTGATTCGTGTACACATGGGCGTCTCCAAGGGTATGGACGAGCTCTCC 66055 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || || | | | |||| || | ||||| || || |||||||| ||||| Sbjct 66056 ACAATCCAACCCAGCGCATTTCGCGAGCAAAATAGTCAGCAGCGCATAGCTGGCAATGTT 66115 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 |||||||| ||||| ||||| ||||| || |||||| ||||| || |||| ||| Sbjct 66116 GAACGGGACGCCGAGACCCATATCGGCACTCCGCTGGTAGAGCTGACAACTGAGCTTCCC 66175 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 | |||||||| ||||| ||| ||||| || || || || |||||| | || | | Sbjct 66176 GCCGGCCACGTAGAACTGCGACAGGACGTGGCATGGTGGCAGCGCCATCTCGGGGATGGC 66235 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCG-TGGGGCCGCCTGTTAATTAGAT 21222 | ||||||||||||| |||| | || ||||| ||| | ||| | | | | | | | Sbjct 66236 CACGGGGTTCCACGCACACAAGAGCATTCGCCGGTCGCTTGGGTTGTTTCTGAGTGCG-T 66294 Query 21223 CCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGT 21282 | || | | || |||||||| || |||| || ||| | ||||| ||| Sbjct 66295 CGACGATTTTCCGGAGCTGGTCGACGCCCTTTCCAGTGTAATCATCGTCGCAGTTGGTGT 66354 Query 21283 ACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGC 21342 | || || || || | ||| ||||| || ||||| || || || || ||||| || | Sbjct 66355 AGCTTGCGCCGAAGTGCCGCCATTGGAAGCCATACACTGGTCCGAGGTCTCCCTCACGTC 66414 Query 21343 GGTC 21346 | || Sbjct 66415 GATC 66418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427772387030640