Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq531 152 7e-32 seq171 152 7e-32 seq243 118 2e-21 seq512 89.7 7e-13 >seq531 Length=50098 Score = 152 bits (168), Expect = 7e-32 Identities = 403/603 (67%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||| || ||||||| ||||| || | ||| || ||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||||| || ||||| || ||||| || || | | || || ||| |||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 47617 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCATGT 50136 ||||||| || || || || || | |||||||| || | | | | |||| || Sbjct 47616 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 47558 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || ||||| | ||||||| | ||||| || || || || || || || Sbjct 47557 ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 47498 Query 50197 AAGAGA--TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 ||||| | || | | || | |||| | ||| || ||||||| | ||||| Sbjct 47497 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 47440 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | ||||| ||||| |||||||| || || || || || || || || | | | || | | Sbjct 47439 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 47380 Query 50315 TCTGCACTTCTGTACAA-AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 |||| | || || || || ||| | || | ||| ||| |||||||| ||| ||| Sbjct 47379 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 47321 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT---C 50430 || ||||| |||| || || || || || || |||| | | || || | | Sbjct 47320 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCC 47261 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || || | ||||| || | ||||||||||| ||||||||||| || |||||||| Sbjct 47260 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 47201 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 | ||| || | ||||| || || |||| | |||||| || | |||| |||| || || Sbjct 47200 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 47141 Query 50551 TTT 50553 ||| Sbjct 47140 TTT 47138 >seq171 Length=86538 Score = 152 bits (168), Expect = 7e-32 Identities = 403/603 (67%), Gaps = 13/603 (2%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||| || ||||||| ||||| || | ||| || ||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGA 50077 || ||||||| || ||||| || ||||| || || | | || || ||| |||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 4631 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTCATGT 50136 ||||||| || || || || || | |||||||| || | | | | |||| || Sbjct 4630 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 4572 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| || ||||| | ||||||| | ||||| || || || || || || || Sbjct 4571 ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 4512 Query 50197 AAGAGA--TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 ||||| | || | | || | |||| | ||| || ||||||| | ||||| Sbjct 4511 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 4454 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 | ||||| ||||| |||||||| || || || || || || || || | | | || | | Sbjct 4453 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 4394 Query 50315 TCTGCACTTCTGTACAA-AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCT 50373 |||| | || || || || ||| | || | ||| ||| |||||||| ||| ||| Sbjct 4393 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 4335 Query 50374 GCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT---C 50430 || ||||| |||| || || || || || || |||| | | || || | | Sbjct 4334 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCC 4275 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || || || | ||||| || | ||||||||||| ||||||||||| || |||||||| Sbjct 4274 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 4215 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 | ||| || | ||||| || || |||| | |||||| || | |||| |||| || || Sbjct 4214 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGGG 4155 Query 50551 TTT 50553 ||| Sbjct 4154 TTT 4152 >seq243 Length=69200 Score = 118 bits (130), Expect = 2e-21 Identities = 547/857 (64%), Gaps = 12/857 (1%) Strand=Plus/Minus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || ||||| || ||||| ||||| | || | ||||| | ||||||||||| Sbjct 22409 GACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTGCAC 22350 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 ||||| |||||||| || || || ||||| | ||||| ||||| ||||| || ||| Sbjct 22349 AGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCGTCC 22290 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 |||||||| ||| |||| ||||| ||||| ||||| || || || || ||||| Sbjct 22289 TTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGATTTGGAACCAGAGC 22230 Query 79801 ACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT 79860 || | ||| | | | | | | || ||| | ||| ||||| |||||| | Sbjct 22229 TCTTGCGCCGTGACTGTTTTCGTTCCCCTGCCTTCACGTTCATATTGCTCGTATAATTTT 22170 Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGA-CATTCGTCAGGACACATCAACGA 79919 || ||||| ||||| | || | | || ||| || | | ||| | | | Sbjct 22169 TCAAACTCTTCTCCATAGCAGTCAGCGAGGCCTGGAGCAAT-ATTAGGGTCGAAAAGTGT 22111 Query 79920 CCACTCTCCATCATCCTT-TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 79978 ||| | ||| | || || || || |||||||| | ||| |||||||| || | || Sbjct 22110 CCAGT-TCCCTGATTTTTGCACACGCTTCATAAACAAATCTGGAATCCAGAGTCCATAAA 22052 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 | ||||| | | | || || || || || || || || ||| || | | Sbjct 22051 AGAGATCACGAGCGCGCATTTCTTCTTTCCCGGTGTTTCGCTTGAGCGTGAGAAATTCGA 21992 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 |||||| | |||||| ||||| | || || || | | || || |||| || | Sbjct 21991 AAATATCTGCATGCCAGGGTTCTACATAGATTGCAAATGCACCTTTTCTTTTGCCACCAC 21932 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 | || || | |||| || || | ||| |||| | | |||||||| || |||||| Sbjct 21931 CTTGGTCAACATATCGTGCCGTATCATTGAAAACACGAAGCATTGGAACAAGCCCATTGC 21872 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTGATAG 80216 || |||||||| || | ||| || ||||||| || || || | | | | || ||| Sbjct 21871 TCGTTCCATTGGTTCCAGCGATGTAACTTCCACATGCGCGGATGTCGTGC-ACGTG-TAG 21814 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || ||||| || ||| ||| ||| | || ||| | | || || | || || Sbjct 21813 GCCGATTCCTCCGGCCGATTTGCTGATAAGCGCACATGTTCGCAGTGTGTCGAATATTCC 21754 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTA 80334 ||| || || | | || || ||||||||| ||| | ||| || | Sbjct 21753 TGGTATAGAGTCTTCCTTGGTCGCAATTAAGAAACAGCTACTCATCTGAGGTTTCG--GA 21696 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || |||||||| | || || | ||||||||||||||| ||| || || | ||| Sbjct 21695 GTACCTGCATTAAACAGCGTTGGTGTCGCGTGCGTAAACCATCCTTCGGAGAGCAATTTG 21636 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || | || | ||| ||| | ||| | || ||||| | ||| || |||| | | Sbjct 21635 TAGCTTTCTTTCACTGCTTCAAAATCAGGTGCGTGGATTCCGATCGCAACCCGCAAAAGC 21576 Query 80455 ATGTGCTGAGGTCTTTC 80471 |||| |||||||| || Sbjct 21575 ATGTATTGAGGTCTCTC 21559 >seq512 Length=1106 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| || || | ||||| || | ||||||||||| |||||||||||||| |||||||| Sbjct 1088 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAATGAAGCCTCTGC 1029 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 50549 | ||| || | ||||| || || |||| | |||||| || | |||| |||| || || Sbjct 1028 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 969 Query 50550 ATTT 50553 ||| Sbjct 968 GTTT 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718262577996520