Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq531 145 7e-30 seq171 140 3e-28 >seq531 Length=50098 Score = 145 bits (160), Expect = 7e-30 Identities = 369/554 (67%), Gaps = 22/554 (4%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| || || ||||| || | |||||||| | ||| || ||||| || ||||| Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA--GCAAATGACCCGGAAAAG 13988 |||||||| |||||||| || || | ||| || |||||| | || | | | ||| | Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAA--G 47618 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || |||||||| || || || ||| | | | || ||| | ||||| || | || Sbjct 47617 AAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA 47558 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 |||||||| | ||||||| || || | | || | | || || || ||||| Sbjct 47557 ---ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCG 47501 Query 14109 TTAAATAAATATTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 || || | | |||| ||| || || ||||| || | || || || || | | || Sbjct 47500 TTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATAT--ACGTGTCGATCAGGATGGAAT 47443 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC-- 14224 |||| || ||||| || ||||| || || || || |||||||||||||| | | |||| Sbjct 47442 ACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAG 47383 Query 14225 CGACC--ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 ||| | | ||| ||| || | | | || | ||| ||| ||||| |||||| Sbjct 47382 CGATCTGAATGTCGTTC----ATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCA 47327 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT- 14341 ||||| |||||||||| | || || || |||| |||| || | ||| || || Sbjct 47326 GATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTG 47267 Query 14342 --TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 || ||| || | ||| | ||||| |||||||| |||||||||||||| ||| Sbjct 47266 TCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCC 47207 Query 14400 ACAGCTTTTTTATA 14413 | |||| ||| || Sbjct 47206 TCTGCTTCTTTGTA 47193 >seq171 Length=86538 Score = 140 bits (154), Expect = 3e-28 Identities = 368/554 (66%), Gaps = 22/554 (4%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| || || ||||| || | |||||||| | ||| || ||||| || ||||| Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA--GCAAATGACCCGGAAAAG 13988 |||||||| |||||||| || || | ||| || |||||| | || | | | ||| | Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAA--G 4632 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || |||||||| || || || ||| | | | || ||| | ||||| || | || Sbjct 4631 AAGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA 4572 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 |||||||| | ||||| | || || | | || | | || || || ||||| Sbjct 4571 ---ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCG 4515 Query 14109 TTAAATAAATATTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 || || | | |||| ||| || || ||||| || | || || || || | | || Sbjct 4514 TTGAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATAT--ACGTGTCGATCAGGATGGAAT 4457 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC-- 14224 |||| || ||||| || ||||| || || || || |||||||||||||| | | |||| Sbjct 4456 ACATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAG 4397 Query 14225 CGACC--ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 ||| | | ||| ||| || | | | || | ||| ||| ||||| |||||| Sbjct 4396 CGATCTGAATGTCGTTC----ATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCA 4341 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT- 14341 ||||| |||||||||| | || || || |||| |||| || | ||| || || Sbjct 4340 GATGCTGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTG 4281 Query 14342 --TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCG 14399 || ||| || | ||| | ||||| |||||||| |||||||||||||| ||| Sbjct 4280 TCTTCCCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCC 4221 Query 14400 ACAGCTTTTTTATA 14413 | |||| ||| || Sbjct 4220 TCTGCTTCTTTGTA 4207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723844356200