Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq531 143 3e-29 seq171 140 3e-28 >seq531 Length=50098 Score = 143 bits (158), Expect = 3e-29 Identities = 408/621 (66%), Gaps = 12/621 (2%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| || || ||||| || | |||||||| | ||| || ||||| || ||||| Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||| |||||||| || || | ||| || |||||| ||| ||| ||||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 |||||||| || || || ||| | | |||| ||| | ||||| || | || Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA-- 47558 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||||| | ||||||| || || | | || | | || || || || || || Sbjct 47557 -ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 47499 Query 13899 GAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | | |||| ||| || || ||||| || | || || || || | | |||| Sbjct 47498 GAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATAT--ACGTGTCGATCAGGATGGAATAC 47441 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 || || ||||| || ||||| || || || || ||||||||||| || | | |||| | | Sbjct 47440 ATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAG-C 47382 Query 14017 CAT-TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || | || || | | | || | || ||| || || |||||| || Sbjct 47381 GATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGC 47322 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT---TTT 14132 ||| |||||||||| | || || || |||| |||| || | ||| || || || Sbjct 47321 TGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTC 47262 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||| || | ||| | ||||| |||||||| |||||||||||||| ||| | || Sbjct 47261 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 47202 Query 14193 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGA 14252 || ||| || | ||| || || ||| || ||||| | ||| |||| | Sbjct 47201 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 47142 Query 14253 TGTTTCTTTAAGAATTGGCTC 14273 |||||| ||| |||||||| Sbjct 47141 GTTTTCTTGAAGCATTGGCTC 47121 >seq171 Length=86538 Score = 140 bits (154), Expect = 3e-28 Identities = 407/621 (66%), Gaps = 12/621 (2%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| || || ||||| || | |||||||| | ||| || ||||| || ||||| Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||| |||||||| || || | ||| || |||||| ||| ||| ||||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 |||||||| || || || ||| | | |||| ||| | ||||| || | || Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGAATTA-- 4572 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||||| | ||||| | || || | | || | | || || || || || || Sbjct 4571 -ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 4513 Query 13899 GAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 13956 ||| | | |||| ||| || || ||||| || | || || || || | | |||| Sbjct 4512 GAAGAGCCTTGCCTTATCTGCTTGGTTCTTGATAT--ACGTGTCGATCAGGATGGAATAC 4455 Query 13957 ATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14016 || || ||||| || ||||| || || || || ||||||||||| || | | |||| | | Sbjct 4454 ATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAG-C 4396 Query 14017 CAT-TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || | || || | | | || | || ||| || || |||||| || Sbjct 4395 GATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGC 4336 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT---TTT 14132 ||| |||||||||| | || || || |||| |||| || | ||| || || || Sbjct 4335 TGCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTC 4276 Query 14133 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14192 ||| || | ||| | ||||| |||||||| |||||||||||||| ||| | || Sbjct 4275 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 4216 Query 14193 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTGAAGA 14252 || ||| || | ||| || || ||| || ||||| | ||| |||| | Sbjct 4215 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 4156 Query 14253 TGTTTCTTTAAGAATTGGCTC 14273 |||||| ||| |||||||| Sbjct 4155 GTTTTCTTGAAGCATTGGCTC 4135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584654224520