Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq243 131 2e-25 seq531 125 1e-23 seq171 125 1e-23 >seq243 Length=69200 Score = 131 bits (144), Expect = 2e-25 Identities = 552/858 (64%), Gaps = 14/858 (2%) Strand=Plus/Minus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || || ||||| || ||||| ||||| | || | ||||| | ||||||||||| Sbjct 22409 GACGCGAGATTGCAGACGGCAACCTCGTCAGGGGATGTATATTCGACGATTTCAGTGCAC 22350 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || || ||||||||||| || || ||||| | ||||| ||||| ||||| || ||| Sbjct 22349 AGGTTGCTACACTTGATCGTGCCCAAATTCTTCTGATTGGACTTTTCATTACATGCGTCC 22290 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 |||||||| || |||| ||||| ||||| ||||| || || || || ||||| Sbjct 22289 TTATAAAGCATGTACGGGGTACCGGTTTCTATCTGGGACTCGATGATTTGGAACCAGAGC 22230 Query 71884 ACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT 71943 || | ||| | | | | ||| | || ||| | ||| ||||| |||||| | Sbjct 22229 TCTTGCGCCGTGACTGTTTTCGTTCCCCTGCCTTCACGTTCATATTGCTCGTATAATTTT 22170 Query 71944 TCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGA-CATTCATTCGGACACATCAATG 72001 || ||||| ||| || |||| | | | || ||| || | ||| || | | || Sbjct 22169 TCAAACTCTTCT-CCATAGCAGTCAGCGAGGCCTGGAGCAAT-ATTAGGGTCGAAAAGTG 22112 Query 72002 ACCACTCTCCATCATCATT-TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||| | ||| | || || || || |||||||| | ||| |||||||| || | | Sbjct 22111 TCCAGT-TCCCTGATTTTTGCACACGCTTCATAAACAAATCTGGAATCCAGAGTCCATAA 22053 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || ||||| | | | || || || || || || || || ||| || | Sbjct 22052 AAGAGATCACGAGCGCGCATTTCTTCTTTCCCGGTGTTTCGCTTGAGCGTGAGAAATTCG 21993 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | |||||| | |||||| ||||| | || || || | | || | |||| || Sbjct 21992 AAAATATCTGCATGCCAGGGTTCTACATAGATTGCAAATGCACCTTTTCTTTTGCCACCA 21933 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 || || || | |||| || || | ||| |||| | | |||||||| || |||||| Sbjct 21932 CCTTGGTCAACATATCGTGCCGTATCATTGAAAACACGAAGCATTGGAACAAGCCCATTG 21873 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT--TGCTAATTGATA 72298 | |||||||| || | ||| || ||||||| || || || | ||| | || || Sbjct 21872 CTCGTTCCATTGGTTCCAGCGATGTAACTTCCACATGCGCGGATGTCGTGC-ACGTG-TA 21815 Query 72299 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 72358 | || ||||| || ||| ||| ||| | || ||| | | || || | || | Sbjct 21814 GGCCGATTCCTCCGGCCGATTTGCTGATAAGCGCACATGTTCGCAGTGTGTCGAATATTC 21755 Query 72359 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACT 72416 | |||| || ||| | | || || ||||||||| ||| | ||| || Sbjct 21754 CTGGTATAGAGTCTTCCTTGGTCGCAATTAAGAAACAGCTACTCATCTGAGGTTTCG--G 21697 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || |||||||| | || || | ||||||||||||||| ||| || || | || Sbjct 21696 AGTACCTGCATTAAACAGCGTTGGTGTCGCGTGCGTAAACCATCCTTCGGAGAGCAATTT 21637 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| | || | ||| ||| | ||| | || ||||| | ||| || |||| | Sbjct 21636 GTAGCTTTCTTTCACTGCTTCAAAATCAGGTGCGTGGATTCCGATCGCAACCCGCAAAAG 21577 Query 72537 CATATGCTGAGGTCTTTC 72554 ||| | |||||||| || Sbjct 21576 CATGTATTGAGGTCTCTC 21559 >seq531 Length=50098 Score = 125 bits (138), Expect = 1e-23 Identities = 399/604 (66%), Gaps = 15/604 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| || ||||||| |||||||| | ||| | ||||| || || | Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 47617 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT 42241 ||||||| || || || || || | | |||||| || | | | | ||| || Sbjct 47616 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 47558 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || ||||| | ||||||| | ||||| || || || || || || || Sbjct 47557 ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 47498 Query 42302 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||| | || | | || | |||| | ||| || ||||||| | ||||| Sbjct 47497 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 47440 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || ||||| |||||||| || || || || || || || || | | || | | Sbjct 47439 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 47380 Query 42420 CCTGTACTTCTGTACAA-AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 ||| | || || || || ||| | || | ||| || |||||||| ||| ||| Sbjct 47379 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 47321 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTC 42535 || ||||| |||| || || || || || | ||||| | ||||| | | ||| Sbjct 47320 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTC 47262 Query 42536 CAAT-CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 | || | || | ||||| || | ||||||||||| || |||||||| || || ||||| Sbjct 47261 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 47202 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 | ||| || | ||||| ||||| |||| | ||||| || | |||| |||| || || Sbjct 47201 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 47142 Query 42655 ATTT 42658 ||| Sbjct 47141 GTTT 47138 >seq171 Length=86538 Score = 125 bits (138), Expect = 1e-23 Identities = 399/604 (66%), Gaps = 15/604 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| || ||||||| |||||||| | ||| | ||||| || || | Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || ||||||| || ||||| || ||||| || || | | || || |||| |||| Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTG-CACAGAAACTTCCACTGAAGA 4631 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA-CTGTCATGT 42241 ||||||| || || || || || | | |||||| || | | | | ||| || Sbjct 4630 AGATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACGAGTCTGCTGA-ATTA 4572 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| || ||||| | ||||||| | ||||| || || || || || || || Sbjct 4571 ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTTG 4512 Query 42302 AAGAGA--TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||||| | || | | || | |||| | ||| || ||||||| | ||||| Sbjct 4511 AAGAGCCTTGCCTTATCTGCTTGGT-TCTTGAT-ATACGTGTCGATCAGGATGGAATACA 4454 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | || || ||||| |||||||| || || || || || || || || | | || | | Sbjct 4453 TCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCGA 4394 Query 42420 CCTGTACTTCTGTACAA-AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 ||| | || || || || ||| | || | ||| || |||||||| ||| ||| Sbjct 4393 TCTGAATGTC-GTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 4335 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTC 42535 || ||||| |||| || || || || || | ||||| | ||||| | | ||| Sbjct 4334 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTC-GTCGTTAAGCTTGTCTTC 4276 Query 42536 CAAT-CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 | || | || | ||||| || | ||||||||||| || |||||||| || || ||||| Sbjct 4275 CCATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGC 4216 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGG 42654 | ||| || | ||||| ||||| |||| | ||||| || | |||| |||| || || Sbjct 4215 TTCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCTGTTCGG 4156 Query 42655 ATTT 42658 ||| Sbjct 4155 GTTT 4152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133386256680