Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq531 190 3e-43 seq171 185 1e-41 seq237 98.7 1e-15 >seq531 Length=50098 Score = 190 bits (210), Expect = 3e-43 Identities = 398/582 (68%), Gaps = 11/582 (2%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 |||||||| ||| ||||| || |||||| | | |||||| | || |||| || ||| Sbjct 47157 CTGTTTCCAATCGAGTATCCCGATATTTGGAAGAAATACAAAGAAGCAGAGGCTTCGTTT 47216 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGAC 125113 ||||| || ||||| || || || ||| | || | | || ||||| ||| | || || Sbjct 47217 TGGACAGTTGAAGAAGTAGACCTTTCCCAAGATGTTAAAGAATGGGAAGACAAGCTTAAC 47276 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| || |||| || || || | || |||||||| Sbjct 47277 GACGAC-GAGCGTCACTTCATCAAGCACGTTCTGGCATTTTTCGCAGCATCTGATGGAAT 47335 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT- 125232 ||| || ||||| | |||| ||| | || | || | || || |||| Sbjct 47336 AGTCCTTGAGAATCTTGCGGCACGCTTCATGAACGACATTCAGATCGCTGAAGT-TCGTT 47394 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 ||||||| || ||||||||| |||||| || | |||||||| ||||| || | |||| Sbjct 47395 GCTTTTATGGTTTCCAAATCGCGATTGAAAATATTCACTCGGAGATGTATTCCATCCTGA 47454 Query 125293 TTGACATGTACATTCGCGATCC--GCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | |||| ||| || | || || ||| | || | |||||| ||||| || || || Sbjct 47455 TCGACACGTATAT-CAAGAACCAAGCAGATAAGGCA-AGGCTCTTCAACGCTATGGAGAC 47512 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | |||| | | | | ||||||||||||| ||| ||||| || | || | Sbjct 47513 TATTCCGTGTGTTCAGCAGAAGGCTCAATGGGCAATTAAATGGATTAATTCAGC--AGAC 47570 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | ||| |||||| ||||| || | ||||| || || ||||| |||||||| || || Sbjct 47571 T-CGTTCGCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGTGGAAG 47629 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||| || || || |||||||||||||| ||| | ||||| || | || |||||| Sbjct 47630 TTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTCAGTAA 47689 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| | || || || || ||||| | ||||||||||| || Sbjct 47690 CGAGCTCATTTCCCGTGATGAGGGGTTGCACTGTGACTTCGC 47731 >seq171 Length=86538 Score = 185 bits (204), Expect = 1e-41 Identities = 397/582 (68%), Gaps = 11/582 (2%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 |||||||| ||| ||||| || |||||| | | |||||| | || |||| || ||| Sbjct 4171 CTGTTTCCAATCGAGTATCCCGATATTTGGAAGAAATACAAAGAAGCAGAGGCTTCGTTT 4230 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGAC 125113 ||||| || ||||| || || || ||| | || | | || ||||| ||| | || || Sbjct 4231 TGGACAGTTGAAGAAGTAGACCTTTCCCAAGATGTTAAAGAATGGGAAGACAAGCTTAAC 4290 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| || |||| || || || | || |||||||| Sbjct 4291 GACGAC-GAGCGTCACTTCATCAAGCACGTTCTGGCATTTTTCGCAGCATCTGATGGAAT 4349 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT- 125232 ||| || ||||| | |||| ||| | || | || | || || |||| Sbjct 4350 AGTCCTTGAGAATCTTGCGGCACGCTTCATGAACGACATTCAGATCGCTGAAGT-TCGTT 4408 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 ||||||| || ||||||||| |||||| || | |||||||| ||||| || | |||| Sbjct 4409 GCTTTTATGGTTTCCAAATCGCGATTGAAAATATTCACTCGGAGATGTATTCCATCCTGA 4468 Query 125293 TTGACATGTACATTCGCGATCC--GCAACGTAAACACATGCTCTTTAACGCAATCGACAC 125350 | |||| ||| || | || || ||| | || | |||||| ||||| || || || Sbjct 4469 TCGACACGTATAT-CAAGAACCAAGCAGATAAGGCA-AGGCTCTTCAACGCTATGGAGAC 4526 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | |||| | | | | |||||||| |||| ||| ||||| || | || | Sbjct 4527 TATTCCGTGTGTTCAGCAGAAGGCTCAGTGGGCAATTAAATGGATTAATTCAGC--AGAC 4584 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 | ||| |||||| ||||| || | ||||| || || ||||| |||||||| || || Sbjct 4585 T-CGTTCGCCGAAAGACTTGTCGGGTTCGCAGCTGTGGAGGGAATCTTCTTCAGTGGAAG 4643 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||| || || || |||||||||||||| ||| | ||||| || | || |||||| Sbjct 4644 TTTCTGTGCAATTTTCTGGCTCAAGAAGCGAGGATTAATGCCAGGTTTAACCTTCAGTAA 4703 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| | || || || || ||||| | ||||||||||| || Sbjct 4704 CGAGCTCATTTCCCGTGATGAGGGGTTGCACTGTGACTTCGC 4745 >seq237 Length=72600 Score = 98.7 bits (108), Expect = 1e-15 Identities = 321/496 (65%), Gaps = 16/496 (3%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 || ||| ||||||||||| |||||| | |||||| |||| ||||| || ||| | Sbjct 66577 CCCCTGCTGACGACCAAGCGTGTCTTCTGGAGAGGCGTCGTCGAAGAGCTTTTCTGGTTC 66518 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 ||| ||| ||| | ||||| | || | |||| || | ||| ||| ||| Sbjct 66517 ATTCAGGGAGACACCGACGCCAACCATTTGCGTGATAAGGACGTTCGCATATGGGACGGA 66458 Query 70016 AACAGTAGTCGAAGCGTTT---TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGAT 70072 || | || ||| | | | || || || || ||||||| ||| ||||| || Sbjct 66457 AA---TGGTTCAAGAGAATACCTCGACTCACTTGGGCTCACCGATCGACGTGAGGGAGAC 66401 Query 70073 CTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAG 70132 || || |||||||| || ||||| ||| |||||| ||| | | || ||||||| Sbjct 66400 CTCGGACCAGTGTATGGCTTCCAATGGCGGCACTTCGGCGCAAGCTACACCAACTGCGAC 66341 Query 70133 ACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACC 70192 || || | || |||| || || || | | || |||| | ||| | |||| | | Sbjct 66340 GATGATTACACTGGAAAGGGCGTCGACCAGCTCCGGAAAATCGTCGACGCACTCAGAAAC 66281 Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 || |||| || || | || | |||| | ||||| || | | | | | | ||| Sbjct 66280 AACCCAAGCGACCGGCGAATGCTCTTGTGTGCGTGGAACCCCGTGGCCATCCCCGAGATG 66221 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCA-----AATTGT 70307 || || ||||| || ||| || | ||||| ||| | || || | | |||| Sbjct 66220 GCGCTGCCACCATGCCACGTCCTGTCGCAGTTCTACGTGGCCGGCGGGAAGCTCAGTTGT 66161 Query 70308 CATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAA 70367 || || | || ||| |||||||||| ||||| ||||| || || || |||||||| | Sbjct 66160 CA-GC----TCTACCAGCGGAGTGCCGATATGGGTCTCGGCGTCCCGTTCAACATTGCCA 66106 Query 70368 GCTATTCTATGTTGAC 70383 ||||| | || |||| Sbjct 66105 GCTATGCGCTGCTGAC 66090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741052780574680