Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq531 100 2e-16 seq171 100 2e-16 >seq531 Length=50098 Score = 100 bits (110), Expect = 2e-16 Identities = 382/593 (64%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| || || ||||||||||| || ||||| | || |||||||| || |||| Sbjct 47735 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 47676 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 ||| ||||| | ||||| || || | ||| || || ||| || || || || Sbjct 47675 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 47616 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 ||||| || || ||||| ||| | | | ||||| | ||| | | | | | | Sbjct 47615 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACG-AGTCTGCTGAATTA- 47558 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| || | ||||| | || || || | ||| || ||| | || || ||||| Sbjct 47557 -ATCCATTTAATTGCCCATTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 47499 Query 13390 AAATAAA--TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447 || | | || | | ||| | ||| | |||| || || |||| | | |||| Sbjct 47498 GAAGAGCCTTGCCTTATCTGCTTGGT-TCTTGA-TATACGTGTCGATCAGGATGGAATAC 47441 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507 || || || ||||||||||| ||||| ||||||||||||||||| || | | | || | Sbjct 47440 ATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCG 47381 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | ||||| ||| || | | | || | || || ||||| || ||| || Sbjct 47380 ATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 47321 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT---TAAC 13624 || ||||| || || | |||||| || || | |||| || | ||| | | Sbjct 47320 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCC 47261 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 || ||| || ||||| || | ||||| || ||||| |||||||| ||||| | || Sbjct 47260 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 47201 Query 13685 TTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCT 13737 | || || || |||| ||||| ||| | || ||||||| ||| ||||| Sbjct 47200 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCT 47148 >seq171 Length=86538 Score = 100 bits (110), Expect = 2e-16 Identities = 382/593 (64%), Gaps = 10/593 (2%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| || || ||||||||||| || ||||| | || |||||||| || |||| Sbjct 4749 ACAAGCGAAGTCACAGTGCAACCCCTCATCACGGGAAATGAGCTCGTTACTGAAGGTTAA 4690 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 ||| ||||| | ||||| || || | ||| || || ||| || || || || Sbjct 4689 ACCTGGCATTAATCCTCGCTTCTTGAGCCAGAAAATTGCACAGAAACTTCCACTGAAGAA 4630 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 ||||| || || ||||| ||| | | | ||||| | ||| | | | | | | Sbjct 4629 GATTCCCTCCACAGCTGCGAACCCGACAAGTCTTTCGGCGAACG-AGTCTGCTGAATTA- 4572 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTT 13389 ||||| || | ||||| | || || || | ||| || ||| | || || ||||| Sbjct 4571 -ATCCATTTAATTGCCCACTGAGCCTTCTGCTGAACACACGGAATAGTCTCCATAGCGTT 4513 Query 13390 AAATAAA--TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447 || | | || | | ||| | ||| | |||| || || |||| | | |||| Sbjct 4512 GAAGAGCCTTGCCTTATCTGCTTGGT-TCTTGA-TATACGTGTCGATCAGGATGGAATAC 4455 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507 || || || ||||||||||| ||||| ||||||||||||||||| || | | | || | Sbjct 4454 ATCTCCGAGTGAATATTTTCAATCGCGATTTGGAAACCATAAAAGCAACGAACTTCAGCG 4395 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 | ||||| ||| || | | | || | || || ||||| || ||| || Sbjct 4394 ATCTGAATGTCGTTCATGAAGCGTGCCGCAAGATTCTCAAGGACTATTCCATCAGATGCT 4335 Query 13568 GCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTT---TAAC 13624 || ||||| || || | |||||| || || | |||| || | ||| | | Sbjct 4334 GCGAAAAATGCCAGAACGTGCTTGATGAAGTGACGCTCGTCGTCGTTAAGCTTGTCTTCC 4275 Query 13625 CAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCC 13684 || ||| || ||||| || | ||||| || ||||| |||||||| ||||| | || Sbjct 4274 CATTCTTTAACATCTTGGGAAAGGTCTACTTCTTCAACTGTCCAAAACGAAGCCTCTGCT 4215 Query 13685 TTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATCT 13737 | || || || |||| ||||| ||| | || ||||||| ||| ||||| Sbjct 4214 TCTTTGTATTTCTTCCAAATATCGGGATACTCGATTGGAAACAGAACATATCT 4162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978759949586