Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq237 93.3 3e-14 >seq237 Length=72600 Score = 93.3 bits (102), Expect = 3e-14 Identities = 209/310 (67%), Gaps = 3/310 (1%) Strand=Plus/Plus Query 25530 TAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTG 25589 |||||||| ||||| || || || |||| ||||| || | | || |||||||||||| Sbjct 66102 TAGCTGGCAATGTTGAACGGGACGCCGAGACCCATATCGGCACT-CCGCTGGTAGAGCTG 66160 Query 25590 ACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGC 25649 ||| ||||| || || |||||| ||||| ||| | || ||| || || || || Sbjct 66161 ACAACTGAGCTTCCCGCCGGCCACGTAGAACTGCGACAGGACGTGGCATGGTGGCAGCGC 66220 Query 25650 TATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTT 25709 || | | | | |||||||| || |||| || || | || ||| |||||| Sbjct 66221 CATCTCGGGGATGGCCACGGGGTTCCACGCACACAAGAGCATTCGCCGGTCGCTTGGGTT 66280 Query 25710 GTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TG 25768 || |||| || || | || | ||||| || || ||| | || | ||| || | Sbjct 66281 GTTTCTGAGTGCGTCGACGATTTTCCGGAGCTGGTCGACGCCCTTTCCAGTGTAATCATC 66340 Query 25769 CCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTA 25828 | || || ||||| ||| ||||| | || ||| ||||| || ||||| ||||| | Sbjct 66341 GTCGCA-GTTGGTGTAGCTTGCGCCGAAGTGCCGCCATTGGAAGCCATACACTGGTCCGA 66399 Query 25829 GGTCTCCATC 25838 ||||||| || Sbjct 66400 GGTCTCCCTC 66409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340134727219089