Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 >seq2 Length=132159 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| |||||| | || || | || ||||| ||||| || || ||||| || Sbjct 77912 ATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTT 77853 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGA 94970 ||| | || ||||||||||| | | | || || | || || || |||| |||| Sbjct 77852 GTCTTGAACTTTTGCCTTGATGTTTTCAATGGTATC-GTTTGCTTCCACCTCAAGGGTGA 77794 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | |||||| || ||||||||||| Sbjct 77793 TGGTCTTACCAGTCAAAGTTTTGACGAAGATCTGCAT 77757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| |||||| | || || | || ||||| ||||| || || ||||| || Sbjct 78140 ATCCTCGAGCTGCTTTCCGGCGAAAATGAGTCGCTGCTGGTCTGGTGGGATTCCTTCCTT 78081 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGA 94970 ||| | || ||||||||||| | | | || || | || || || || | |||| Sbjct 78080 GTCTTGAACTTTTGCCTTGATGTTTTCAATGGTATC-GTTTGCTTCCACCTCGAGTGTGA 78022 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| |||||||| || ||||||||||||| Sbjct 78021 TAGTCTTGCCAGTCAGAGTTTTGACGAAGATCTGCATGC 77983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448287316677480