Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Perkinsela_20sp._20CCAP_201560_2F4_20[genbank_20GCA_5F001235845.1_20 2015-08-05] 693 sequences; 9,477,801 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq439 89.7 8e-14 seq303 89.7 8e-14 seq98 86.0 1e-12 seq95 86.0 1e-12 seq87 86.0 1e-12 >seq439 Length=146363 Score = 89.7 bits (98), Expect = 8e-14 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||| || |||||||||||||| ||||| || || || || || || || ||| Sbjct 56909 GACAACATCCGCGGCATCACCAAGCCAGCGATCCGCCGCCTCGCCCGCCGAGGCGGTGTC 56968 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | | || || ||| | || | | ||||| |||| || || Sbjct 56969 AAGCGCATCTCCGGCGTCATGTACGAGGAGGTCCGCGGCATCCTGAAGGGCTTCGTCGAG 57028 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 ||| ||| ||| | || ||| ||||||||| | || || | ||| |||||| | Sbjct 57029 GGCGTCGTCCGTGACTCCGTCACCTACACCGAGCACTCCAAGCGCACGACAGTCACCGCG 57088 Query 16640 ATGGATATCGTCTATGC 16656 |||| ||||||| || Sbjct 57089 CTGGACGTCGTCTACGC 57105 Score = 89.7 bits (98), Expect = 8e-14 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||| || |||||||||||||| ||||| || || || || || || || ||| Sbjct 57383 GACAACATCCGCGGCATCACCAAGCCAGCGATCCGCCGCCTCGCCCGCCGAGGCGGTGTC 57442 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | | || || ||| | || | | ||||| |||| || || Sbjct 57443 AAGCGCATCTCCGGCGTCATGTACGAGGAGGTCCGCGGCATCCTGAAGGGCTTCGTCGAG 57502 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 ||| ||| ||| | || ||| ||||||||| | || || | ||| |||||| | Sbjct 57503 GGCGTCGTCCGTGACTCCGTCACCTACACCGAGCACTCCAAGCGCACGACAGTCACCGCG 57562 Query 16640 ATGGATATCGTCTATGC 16656 |||| ||||||| || Sbjct 57563 CTGGACGTCGTCTACGC 57579 Score = 89.7 bits (98), Expect = 8e-14 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||| || |||||||||||||| ||||| || || || || || || || ||| Sbjct 92924 GACAACATCCGCGGCATCACCAAGCCAGCGATCCGCCGCCTCGCCCGCCGAGGCGGTGTC 92865 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | | || || ||| | || | | ||||| |||| || || Sbjct 92864 AAGCGCATCTCCGGCGTCATGTACGAGGAGGTCCGCGGCATCCTGAAGGGCTTCGTCGAG 92805 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 ||| ||| ||| | || ||| ||||||||| | || || | ||| |||||| | Sbjct 92804 GGCGTCGTCCGTGACTCCGTCACCTACACCGAGCACTCCAAGCGCACGACAGTCACCGCG 92745 Query 16640 ATGGATATCGTCTATGC 16656 |||| ||||||| || Sbjct 92744 CTGGACGTCGTCTACGC 92728 >seq303 Length=61768 Score = 89.7 bits (98), Expect = 8e-14 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||| || |||||||||||||| ||||| || || || || || || || ||| Sbjct 19498 GATAACATCCGCGGCATCACCAAGCCAGCGATCCGCCGCCTCGCCCGCCGAGGCGGTGTC 19557 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | | || || ||| | || | | ||||| |||| || || Sbjct 19558 AAGCGCATCTCCGGCGTCATGTACGAGGAGGTCCGCGGCATCCTGAAGGGCTTCGTCGAG 19617 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 || ||| ||| | || ||| ||||||||| | || || | ||| |||||| | Sbjct 19618 GGGGTCGTCCGTGACTCCGTCACCTACACCGAGCACTCCAAGCGCACGACAGTCACCGCG 19677 Query 16640 ATGGATATCGTCTATGC 16656 |||| ||||||| || Sbjct 19678 CTGGACGTCGTCTACGC 19694 >seq98 Length=35746 Score = 86.0 bits (94), Expect = 1e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||| || |||||||||||||| ||||| || || || || || || || ||| Sbjct 32147 GACAACATCCGCGGCATCACCAAGCCAGCGATCCGCCGCCTCGCCCGCCGAGGCGGTGTC 32206 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | | || || ||| | || | | ||||| |||| || || Sbjct 32207 AAGCGCATCTCCGGCGTCATGTACGAGGAGGTCCGCGGCATCCTGAAGGGCTTCGTCGAG 32266 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 ||| ||| ||| | || ||| || |||||| | || || | ||| |||||| | Sbjct 32267 GGCGTCGTCCGTGACTCCGTCACCTACACTGAGCACTCCAAGCGCACGACAGTCACCGCG 32326 Query 16640 ATGGATATCGTCTATGC 16656 |||| ||||||| || Sbjct 32327 CTGGACGTCGTCTACGC 32343 >seq95 Length=35521 Score = 86.0 bits (94), Expect = 1e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||| || |||||||||||||| ||||| || || || || || || || ||| Sbjct 26878 GACAACATCCGCGGCATCACCAAGCCAGCGATCCGCCGCCTCGCCCGCCGAGGCGGTGTC 26937 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | | || || ||| | || | | ||||| |||| || || Sbjct 26938 AAGCGCATCTCCGGCGTCATGTACGAGGAGGTCCGCGGCATCCTGAAGGGCTTCGTCGAG 26997 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 ||| | | ||| | || ||| ||||||||| | || || | ||| |||||| | Sbjct 26998 GGCGTCGTTCGTGACTCCGTCACCTACACCGAGCACTCCAAGCGCACGACCGTCACCGCG 27057 Query 16640 ATGGATATCGTCTATGC 16656 |||| ||||||| || Sbjct 27058 CTGGACGTCGTCTACGC 27074 >seq87 Length=36083 Score = 86.0 bits (94), Expect = 1e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||| || |||||||||||||| || || || || || || || || || ||| Sbjct 22177 GACAACATCCGCGGCATCACCAAGCCAGCGATTCGCCGCCTCGCCCGCCGAGGCGGTGTC 22236 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| || | | || || ||| | || | | ||||| |||| || || Sbjct 22237 AAGCGCATCTCCGGCGTCATGTACGAGGAGGTCCGCGGCATCCTGAAGGGCTTCGTCGAG 22296 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 ||| ||| ||| | || ||| ||||||||| | || || | ||| |||||| | Sbjct 22297 GGCGTCGTCCGTGACTCCGTCACCTACACCGAGCACTCCAAGCGCACGACCGTCACCGCG 22356 Query 16640 ATGGATATCGTCTATGC 16656 |||| ||||||| || Sbjct 22357 CTGGACGTCGTCTACGC 22373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074566385249